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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KHLDTALVNAGRRKKYTQGSVNSVIQRASSLVFDTVEAKKHATRNRAKGELFYGRRGTLTHFSLQEAMCELEGGAGCALF
PCGAAAVANTILAFVEQGDHVLMTNTAYEPSQDFCTKILAKLGVTTGWFDPLIGADIANLIQPNTKVVFLESPGSITMEV
HDVPAIVAAVRRVAPEAIIMIDNTWAAGVLFKALDFGIDISIQAATKYLIGHSDGMIGTAVANARCWEQLCENAYLMGQM
IDADTAYMTSRGLRTLGVRLRQHHESSLRVAEWLAQHPQVARVNHPALPGSKGHEFWKRDFSGSSGLFSFVLNKRLTDAE
LAAYLDNFSLFSMAYSWGGFESLILANQPEHIAAIRPEAEVDFSGTLIRLHIGLENVDDLLADLAAGFARIV

The query sequence (length=392) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8sad:A 398 392 1.0000 0.9849 1.0000 0.0 8sa7:A, 8sa7:B, 8sa8:A, 8sa8:D, 8sa8:B, 8sa8:C, 8sa9:A, 8sa9:B, 8saa:A, 8saa:B, 8sab:A, 8sab:B, 8sac:A, 8sac:D, 8sac:B, 8sac:C, 8sad:B, 8sae:A, 8sae:B, 8u98:A, 8u98:D, 8u98:B, 8u98:C, 8u99:A, 8u99:B
2 1cl1:B 392 392 0.8852 0.8852 0.8852 0.0 1cl1:A, 1cl2:A, 1cl2:B, 2fq6:A, 2fq6:B, 2gqn:A, 2gqn:B, 4itx:A, 4itx:B
3 4l0o:H 373 396 0.3112 0.3271 0.3081 3.49e-56 4l0o:A, 4l0o:C, 4l0o:E, 4l0o:G, 4l0o:M, 4l0o:O
4 1e5e:A 394 391 0.2832 0.2817 0.2839 5.31e-54 1e5e:B, 1e5f:A, 1e5f:B
5 7d7o:B 377 392 0.3138 0.3263 0.3138 5.59e-54 7d7o:A
6 3aej:A 387 373 0.2857 0.2894 0.3003 6.08e-53 3aej:D, 3aej:B, 3aej:C, 3ael:A, 3ael:D, 3ael:B, 3ael:C, 3aem:A, 3aem:D, 3aem:B, 3aem:C, 3aen:A, 3aen:D, 3aen:B, 3aen:C, 3aeo:A, 3aeo:D, 3aeo:B, 3aeo:C, 3aep:A, 3aep:D, 3aep:B, 3aep:C
7 8j6n:A 390 339 0.2806 0.2821 0.3245 5.12e-50 8j6n:D, 8j6n:B, 8j6n:C, 8j6n:E, 8j6n:H, 8j6n:J, 8j6n:K, 8j6n:F, 8j6n:G, 8j6n:I, 8j6n:L
8 6ld8:A 388 389 0.3240 0.3273 0.3265 4.48e-49 6ld8:D, 6ld8:B, 6ld8:C, 6ld9:A, 6ld9:B, 6ld9:C, 6ld9:D, 6lgo:A, 6lgo:B, 6lgo:C, 6lgo:D
9 5dx5:A 399 381 0.2755 0.2707 0.2835 4.61e-48 5dx5:B
10 6egr:A 396 386 0.2704 0.2677 0.2746 1.65e-47 5d5s:A, 5e4z:A, 4hf8:A, 3jw9:A, 3jwa:A, 3jwb:A, 5k30:A, 5m3z:A, 3mkj:A, 4oma:A, 6s0c:A
11 7ba4:A 377 345 0.2832 0.2944 0.3217 4.67e-46 7ba4:B, 7ba4:C, 7ba4:D
12 3cog:D 392 328 0.2628 0.2628 0.3140 1.13e-45 3cog:A, 3cog:B, 3cog:C, 5eig:C, 5eig:D, 5eig:E, 5eig:F, 5eig:G, 6nba:A, 6nba:B, 6nba:C, 6nba:D, 2nmp:A, 2nmp:B, 2nmp:C, 2nmp:D, 5tsu:A, 5tsu:C, 5tsu:D, 5tsu:E, 5tsu:F, 5tsu:G, 5tsu:H
13 8jui:A 380 394 0.2832 0.2921 0.2817 1.45e-45
14 1qgn:A 398 385 0.2857 0.2814 0.2909 4.98e-45 1i41:A, 1i41:C, 1i41:B, 1i41:D, 1i41:E, 1i41:G, 1i41:F, 1i41:H, 1i41:I, 1i41:K, 1i41:J, 1i41:L, 1i43:A, 1i43:C, 1i43:B, 1i43:D, 1i43:E, 1i43:G, 1i43:F, 1i43:H, 1i43:I, 1i43:K, 1i43:J, 1i43:L, 1i48:A, 1i48:C, 1i48:B, 1i48:D, 1i48:E, 1i48:G, 1i48:F, 1i48:H, 1i48:I, 1i48:K, 1i48:J, 1i48:L, 1qgn:C, 1qgn:B, 1qgn:D, 1qgn:E, 1qgn:G, 1qgn:F, 1qgn:H
15 6ldo:A 381 392 0.2755 0.2835 0.2755 1.57e-43 6ldo:B, 6ldo:C, 6ldo:D, 6ldo:E, 6ldo:F, 6le4:A, 6le4:B, 6le4:C, 6le4:D, 6le4:E, 6le4:F
16 4iyo:D 384 340 0.2730 0.2786 0.3147 2.48e-43 4ixs:B, 4ixz:A, 4iy7:A, 4iy7:B, 4iy7:C, 4iy7:D, 4iyo:A, 4iyo:B, 4iyo:C
17 7mcb:H 380 387 0.2679 0.2763 0.2713 1.96e-42 7mcl:H, 7mcn:H, 7mcp:A, 7mcp:H, 7mcq:A, 7mcq:H, 7mct:H, 7mcu:H, 7mcy:H, 7md0:H, 7md6:H, 7md8:H, 7mda:H, 7mdb:H
18 1cs1:D 384 340 0.2883 0.2943 0.3324 2.11e-42
19 3qhx:A 377 395 0.3138 0.3263 0.3114 6.01e-42 3qhx:B
20 1pg8:A 398 375 0.2755 0.2714 0.2880 5.08e-41 7f1u:A, 7f1u:B, 7f1u:C, 7f1u:D, 7f1v:A, 7f1v:B, 7f1v:C, 7f1v:D, 1pg8:C, 1pg8:B, 1pg8:D, 3vk3:A, 3vk3:B, 3vk3:C, 3vk3:D, 5x2w:A, 5x2w:B, 5x2w:C, 5x2w:D, 5x2x:A, 5x2x:B, 5x2x:C, 5x2x:D, 5x2z:A, 5x2z:B, 5x2z:C, 5x2z:D, 5x30:A, 5x30:B, 5x30:C, 5x30:D
21 5x5h:A 385 387 0.2806 0.2857 0.2842 8.42e-41
22 1n8p:A 393 349 0.2908 0.2901 0.3266 1.32e-40 1n8p:B, 1n8p:C, 1n8p:D
23 6k1l:A 382 341 0.2730 0.2801 0.3138 1.06e-39 6k1l:B, 6k1l:C, 6k1l:D, 6k1m:A, 6k1m:B, 6k1m:C, 6k1m:D, 6k1n:A, 6k1n:B, 6k1n:C, 6k1n:D
24 5ijg:B 403 402 0.2959 0.2878 0.2886 1.12e-38 5ijg:A
25 6cja:A 381 396 0.2857 0.2940 0.2828 1.96e-38 6cja:B, 6cja:C, 6cja:D
26 1ibj:A 380 348 0.2398 0.2474 0.2701 2.13e-38 1ibj:C
27 7nl1:D 400 395 0.2679 0.2625 0.2658 1.11e-37 8bis:C, 8bis:A, 8biu:G, 8biu:A, 8biv:A, 8biv:E, 8biw:E, 8biw:A, 8bix:C, 8bix:A, 8biz:E, 8biz:A, 7nl1:A, 7nl1:B, 7nl1:C, 7nl1:E, 7nl1:F, 7nl1:G, 7nl1:H
28 8wko:A 425 435 0.2985 0.2753 0.2690 1.52e-32 8wko:B, 8wkr:A, 8wkr:B, 8wkr:C, 8wkr:D
29 7kb1:A 428 404 0.2704 0.2477 0.2624 1.28e-26 7kb1:B, 7kb1:C, 7kb1:D
30 2ctz:A 421 429 0.2755 0.2565 0.2517 3.59e-23 2ctz:B
31 8ovh:A 400 405 0.2602 0.2550 0.2519 3.98e-20 8ovh:B, 8ovh:C, 8ovh:D
32 2cb1:A 404 393 0.2628 0.2550 0.2621 1.72e-19
33 7yeo:B 382 262 0.1964 0.2016 0.2939 1.51e-16 7yeo:A
34 8erb:K 429 437 0.2551 0.2331 0.2288 3.53e-12 8erb:A, 8erb:C, 8erb:B, 8erb:D, 8erb:G, 8erb:H, 8erb:F, 8erb:P, 8erb:I, 8erb:J, 8erb:M, 8erb:E, 8erb:Q, 8erb:N, 8erb:L, 8erj:A, 8erj:B, 8erj:C, 8erj:D, 8erj:E, 8erj:F, 8erj:H, 8erj:G
35 2z06:A 252 73 0.0612 0.0952 0.3288 0.38 2z06:B, 2z06:C, 2z06:D
36 6gsj:C5 52 43 0.0383 0.2885 0.3488 1.9 6gsk:C5
37 5ui2:A 316 83 0.0663 0.0823 0.3133 3.2 5ui2:B
38 8oix:H 204 39 0.0357 0.0686 0.3590 8.2 8oix:V
39 5foi:A 389 62 0.0510 0.0514 0.3226 8.8 5foi:B
40 7ekr:B 309 44 0.0434 0.0550 0.3864 9.5 7ekr:A
41 1n31:A 386 110 0.0791 0.0803 0.2818 9.7 1elq:A, 1elq:B, 1elu:A, 1elu:B, 1n2t:A, 1n2t:B, 1n31:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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