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BioLiP
>protein
KGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bpa:3 36 36 1.0000 1.0000 1.0000 8.73e-19
2 2z06:A 252 26 0.3056 0.0437 0.4231 4.4 2z06:B, 2z06:C, 2z06:D
3 5eqc:A 426 24 0.2778 0.0235 0.4167 5.9 5dj9:A, 5dj9:B, 5e3k:A, 5e3k:B, 5e5i:A, 5e5i:B, 5eqc:B, 4nog:A, 4nog:B, 4zlv:A, 4zlv:B, 4zwm:A, 4zwm:B
4 6m64:A 203 13 0.1944 0.0345 0.5385 6.4 7co1:A, 7co1:C, 7co1:E, 6m64:C, 6m64:E, 5xod:A, 6zvq:A
5 7dry:A 186 31 0.3333 0.0645 0.3871 9.4 7drz:A, 7ds0:A, 7ds1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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