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BioLiP
>protein
KFLEKKLKKIAYERIDILMSLAEEEAKKGNWDRAKRYVYLARRIAMKMRIRFPKKWKRRICKKCGTFLLYGRNARVRIKS
KRYPHVVITCLECGAIYRIPMIREKKEKRRKKLEERLKA

The query sequence (length=119) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6k0b:G 120 119 1.0000 0.9917 1.0000 1.17e-80 6k0a:G, 6k0a:H, 6k0b:H
2 1x0t:A 106 93 0.4622 0.5189 0.5914 9.32e-31 2zae:B, 2zae:D
3 2ki7:B 97 96 0.4454 0.5464 0.5521 6.22e-29 2k3r:A
4 6ahr:K 121 86 0.2101 0.2066 0.2907 0.094 6ahu:K
5 5c3u:A 315 39 0.1176 0.0444 0.3590 0.85
6 1ul5:A 86 61 0.1681 0.2326 0.3279 1.9
7 4wvc:A 413 38 0.1176 0.0339 0.3684 2.2 4wvc:B
8 5exd:H 291 58 0.1597 0.0653 0.3276 5.1 5exd:B, 5exd:K, 5exe:E
9 5c4i:E 312 58 0.1597 0.0609 0.3276 5.1 5c4i:B, 5exd:E, 5exe:B
10 5nqv:C 190 20 0.0672 0.0421 0.4000 6.4 5nqv:A, 5nqv:B, 5nqv:D
11 5ujm:E 357 38 0.0840 0.0280 0.2632 6.9
12 6skz:A 2638 29 0.1008 0.0045 0.4138 8.8 6sl0:A, 6sl0:B
13 6sl1:A 2652 29 0.1008 0.0045 0.4138 8.9 6sky:A, 6sky:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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