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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KDVCAPLEKDDIRRLSQAFHRFGIVTVTELIEPHTRKLVRAEADRLLDQYAERRDLRLATTDYTRRSMSVVPSETIAANS
ELVTGLYAHRELLAPLEAIAGERLHPCPKADEEFLITRQEQRGDTHGWHWGDFSFALIWVLQAPPIDVGGLLQCVPHTTW
DKASPQINRYLVENPIDTYHFESGDVYFLRTDTTLHRTIPLREDTTRIILNMTWAGERDLSRKLAADDRWWDNAEVSAAR
AIKD

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6nie:A 244 243 0.9959 0.9959 1.0000 0.0 6nie:B, 6nie:C, 6nie:D
2 7jsd:B 256 235 0.4508 0.4297 0.4681 2.03e-68 7jsd:A, 7jsd:C, 7jsd:D
3 7u6j:B 248 212 0.3934 0.3871 0.4528 1.54e-66 7u6i:A, 7u6j:A, 7u6j:C, 7u6j:D, 7u6j:E, 7u6j:F, 7u6j:G, 7u6j:H
4 7u6h:A 253 215 0.3689 0.3557 0.4186 4.24e-57 7u6h:B, 7u6h:C, 7u6h:D
5 3e6j:A 219 53 0.0738 0.0822 0.3396 0.49 5uff:A
6 8ro0:A 2231 198 0.1926 0.0211 0.2374 0.62 8ro1:A
7 5uf1:B 241 53 0.0738 0.0747 0.3396 0.86 5uf1:A, 5uf4:A, 5uf4:B, 5uf4:C
8 5ufc:A 240 53 0.0738 0.0750 0.3396 0.92 5ufc:B, 5ufc:C
9 4v3p:SS 146 47 0.0615 0.1027 0.3191 4.9 8ip8:ra, 8ip9:ra, 8ipa:ra, 8ipb:ra, 8jiw:BT, 8r57:T, 4v7e:BT
10 6jdv:A 1036 32 0.0492 0.0116 0.3750 5.6 6kc8:A
11 6jdq:A 1069 32 0.0492 0.0112 0.3750 5.7 6je4:A, 6je4:E, 6je4:K, 6je9:A
12 6kc7:A 963 32 0.0492 0.0125 0.3750 5.7
13 6je4:O 1049 32 0.0492 0.0114 0.3750 5.9 8hj4:A, 8ja0:A, 6je9:C
14 8t0q:C 517 167 0.1475 0.0696 0.2156 6.7 8t0q:D, 8t0v:D
15 6jfu:A 884 32 0.0492 0.0136 0.3750 7.1
16 6je3:A 858 32 0.0492 0.0140 0.3750 7.3
17 4fso:A 354 21 0.0492 0.0339 0.5714 8.7 4fso:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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