Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KDQELYFYNWSEYIPSEVLEDFTKETGIKVIYSTYESNESMYAKLKTGYDLVVPSTYFVSKMRKEGMLQEIDHSKLSHFK
DLDPNYLNKPFDPGNKFSIPYIWGATGIGINTDMLDKKSLKNWGDLWDAKWAGQLMLMDDAREVFHIALSKLGYSPNTTN
PKEIKAAYRELKKLMPNVLVFNSDFPANPYLAGEVSLGMLWNGSAYMARQEGAPIQIIWPEKGTIFWMDSISIPAGAKNI
EAAHKMIDFLLRPENAAKIALEIGYPTPVKTAHDLLPKEFANDPSIYPPQSVIDNGEWQDEVGEASVLYDEYFQKLKVN

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xjn:A 322 322 1.0000 0.9907 0.9907 0.0 7xjn:B, 7xjn:C, 7xjn:D
2 1poy:1 323 321 0.6614 0.6533 0.6573 6.67e-158 1pot:A, 1poy:2, 1poy:3, 1poy:4
3 4eqb:A 323 289 0.3605 0.3560 0.3979 9.94e-76 4eqb:B
4 3ttn:A 335 310 0.3605 0.3433 0.3710 2.82e-62 3ttn:B
5 3ttm:A 341 314 0.3542 0.3314 0.3599 2.48e-58 3ttm:B
6 7oyw:A 348 313 0.3511 0.3218 0.3578 3.21e-56 1a99:A, 1a99:B, 1a99:C, 1a99:D, 8asz:A, 8at0:A, 8at0:B, 7oys:A, 7oyt:A, 7oyu:A, 7oyv:A, 7oyv:B, 7oyw:B, 7oyx:A, 7oyx:B, 7oyy:A, 7oyz:A, 6ye0:B, 6ye0:A, 6ye6:A, 6ye6:B, 6ye7:A, 6ye7:B, 6ye8:A, 6ye8:B
7 4euo:A 313 296 0.2382 0.2428 0.2568 3.97e-16
8 4r73:A 321 170 0.1536 0.1526 0.2882 1.93e-10 4r73:B, 4r74:A, 4r74:B, 4r74:C, 4r74:D, 4r75:A
9 8x1a:B 319 170 0.1473 0.1473 0.2765 1.20e-09
10 6wce:A 314 171 0.1379 0.1401 0.2573 6.46e-07
11 6hly:A 320 292 0.2163 0.2156 0.2363 6.53e-07 6hlz:A, 6hlz:B, 6hm2:A, 6hm2:B, 6hm2:C, 6hm2:D, 6hm2:E
12 3e13:X 317 335 0.2571 0.2587 0.2448 1.08e-06 1y4t:A, 1y4t:D
13 6lkg:A 294 254 0.1536 0.1667 0.1929 0.001 6lkg:C, 6lkh:A, 6lkh:B, 6lkj:A, 6lkk:A
14 5t1p:D 328 123 0.0940 0.0915 0.2439 0.005 5t1p:A, 5t1p:B, 5t1p:C
15 1x87:A 495 62 0.0564 0.0364 0.2903 0.038 1x87:B
16 8c4y:AAA 312 206 0.1661 0.1699 0.2573 0.079 8oei:A, 8oem:A, 8oen:A, 8ogg:A, 8rk1:A
17 5f7v:A 388 326 0.2382 0.1959 0.2331 0.083
18 4ixm:A 318 69 0.0627 0.0629 0.2899 0.37 4ixm:B, 4ixn:A, 4ixn:B
19 4aq4:A 418 31 0.0470 0.0359 0.4839 0.67 6x84:B
20 3sxq:A 519 93 0.0721 0.0443 0.2473 0.80 3sxq:B, 3ttb:A, 3ttb:B
21 8gtu:A 236 86 0.0721 0.0975 0.2674 0.90 6a80:A, 6a80:B, 6a8s:A, 6a8s:B, 6aal:A, 8gtu:B, 8gu1:A, 8gu1:B
22 8jv1:A 360 61 0.0658 0.0583 0.3443 2.2 8jv2:A, 8jv4:A
23 4rya:A 417 27 0.0376 0.0288 0.4444 2.5
24 8bfy:A 393 64 0.0596 0.0483 0.2969 3.1
25 2xd3:A 375 22 0.0345 0.0293 0.5000 4.0
26 8art:B 393 309 0.1944 0.1578 0.2006 4.4 8art:A
27 4kd5:C 229 35 0.0470 0.0655 0.4286 5.0
28 3f11:A 316 324 0.2100 0.2120 0.2068 6.1 2pt2:A
29 4n56:A 494 36 0.0439 0.0283 0.3889 7.5
30 4v6x:Cq 280 28 0.0345 0.0393 0.3929 7.7 7a01:K2, 5aj0:AK, 9bdn:ALP0, 9bdp:ALP0, 8bhf:e1, 8bpo:q2, 8btk:Bs, 6d90:s, 6d9j:s, 9f1b:Bs, 9f1c:Bs, 9f1d:Bs, 6frk:6, 6ftg:s, 6fti:s, 6ftj:s, 8g5z:Lq, 8g60:Lq, 8g6j:Lq, 6gz3:AK, 6gz4:AK, 6gz5:AK, 6hcf:s3, 6hcj:t3, 6hcm:s3, 6hcq:t3, 3j7p:q, 3j92:s, 3jag:s, 3jah:s, 3jai:s, 3jaj:q, 3jan:q, 8k2c:Ls, 7ls1:j, 7ls2:j, 5lzs:s, 5lzt:s, 5lzu:s, 5lzv:s, 5lzw:s, 5lzx:s, 5lzy:s, 5lzz:s, 6mtd:s, 6mte:s, 7nwg:t3, 7nwh:s, 7nwi:s, 7o7y:Bs, 7o7z:Bs, 7o80:Bs, 7o81:Bs, 6olg:AK, 7oyd:s, 8p2k:Bs, 8q87:Bs, 6r5q:s, 6r6g:s, 6r6p:s, 6r7q:s, 8scb:s, 6sgc:s2, 6t59:s3, 4v6w:Cq, 8xsx:Ls, 8xsy:Ls, 8xsz:Ls, 8yoo:Ls, 8yop:Ls, 6zm7:Ls, 6zme:Ls, 6zmi:Ls, 6zmo:Ls, 6zvk:K2
31 5w6q:A 515 36 0.0439 0.0272 0.3889 7.8
32 7pq3:BBB 269 74 0.0627 0.0743 0.2703 8.0 7pq3:AAA
33 6sqx:B 457 68 0.0564 0.0394 0.2647 8.1

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218