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BioLiP
>protein
KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTAR

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j5b:C 59 57 1.0000 0.9661 1.0000 1.57e-37 6j4r:A, 6j4r:D, 6j4r:B, 6j4r:C, 6j5b:A, 6j5b:D, 6j5b:F, 6j5b:H, 6j5b:J
2 7d3t:D 62 55 0.8246 0.7581 0.8545 2.73e-31 7d3t:A, 7d3t:B, 7d3t:C
3 8xas:C 63 54 0.5439 0.4921 0.5741 9.40e-15 8xas:B, 8xas:D, 8xas:A, 8xas:E, 8xas:F
4 6qec:A 65 54 0.4912 0.4308 0.5185 7.84e-14 5lxu:A
5 1v9p:A 584 40 0.2281 0.0223 0.3250 0.54 1dgs:A, 1dgs:B, 1v9p:B
6 6r0r:A 162 19 0.1404 0.0494 0.4211 2.0 6r0f:A, 6r0f:B, 6r0g:A, 6r0g:B, 6r0p:A, 6r0p:B, 6r0t:A, 6r0t:B
7 5y6p:gy 260 37 0.2281 0.0500 0.3514 2.6 5y6p:gz
8 6ki3:B 300 30 0.2456 0.0467 0.4667 3.0 6khy:A, 6khy:C, 6khy:B, 6khy:D, 6ki3:A
9 6ifh:A 119 25 0.1754 0.0840 0.4000 3.3
10 5z4g:A 145 48 0.3158 0.1241 0.3750 3.5 5z4g:B
11 8phv:C 308 17 0.1754 0.0325 0.5882 6.6 8phd:A, 8phd:C, 8phv:A
12 3s6h:A 436 22 0.1579 0.0206 0.4091 8.6 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
13 7z1u:A 147 22 0.1579 0.0612 0.4091 8.7 7z1u:B, 7zos:A
14 2nya:A 791 14 0.1754 0.0126 0.7143 9.5 2nya:F
15 4odv:H 222 56 0.3509 0.0901 0.3571 9.8
16 8yeo:A 255 18 0.1754 0.0392 0.5556 9.8 8w1p:H, 8ydb:A, 8yh9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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