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BioLiP
>protein
IWNWQLQGLCRGMDSSMFFHPDGERGRARTQREQRAKEMCRRCPVIEACRSHALEVGEPYGVWGGLSESERDLLLK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8cwr:A 85 76 1.0000 0.8941 1.0000 9.93e-53 8cwt:A, 8cwt:C, 8cwt:E, 8cyf:A
2 5oay:A 76 72 0.4342 0.4342 0.4583 8.61e-14 6ono:A, 6ono:C, 6onu:A, 6onu:C, 6onu:E, 6onu:G
3 8dy7:H 85 73 0.3816 0.3412 0.3973 2.92e-09 8dy9:H
4 7kim:Z 80 30 0.1974 0.1875 0.5000 1.06e-04 7kif:Z, 7kuf:A, 7kug:A, 7kug:C
5 8d5v:A 84 41 0.1842 0.1667 0.3415 0.37 8d5v:C
6 8aji:A 348 20 0.1316 0.0287 0.5000 3.2 8aji:B, 8aji:C, 8aji:D, 8akh:A, 8akh:B
7 5och:C 537 51 0.2632 0.0372 0.3922 7.6
8 5och:E 576 51 0.2632 0.0347 0.3922 8.0 7ehl:A, 7ehl:B, 5och:A, 5och:B, 5och:D, 5och:F, 5och:G, 5och:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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