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BioLiP
>protein
ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSG

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1lv3:A 65 47 1.0000 0.7231 1.0000 2.68e-30 4tma:I, 4tma:J, 4tma:L
2 3dzv:A 265 30 0.2766 0.0491 0.4333 1.7 3dzv:B
3 7sa4:8 203 34 0.2340 0.0542 0.3235 1.9
4 5k2m:F 53 43 0.2553 0.2264 0.2791 2.1 5k2m:E
5 1eyz:A 389 32 0.2979 0.0360 0.4375 2.8 1eyz:B, 1ez1:A, 1ez1:B, 1kj8:A, 1kj8:B, 1kj9:A, 1kj9:B, 1kji:A, 1kji:B, 1kjj:A, 1kjj:B, 1kjq:A, 1kjq:B
6 7sqr:A 522 23 0.2128 0.0192 0.4348 7.5 7sqr:D, 7sqr:G, 7sqr:J, 7sqs:A
7 5m1t:A 247 28 0.2128 0.0405 0.3571 7.8 5m1t:B
8 5u6n:B 448 12 0.1489 0.0156 0.5833 8.7 5u6m:A, 5u6m:B, 5u6n:A, 5u6s:A, 5u6s:B, 5v2j:A, 5v2j:B, 5v2k:A, 5v2k:B
9 3d3w:A 244 17 0.1702 0.0328 0.4706 9.7 3d3w:B, 1pr9:A, 1pr9:B, 1wnt:A, 1wnt:B, 1wnt:C, 1wnt:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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