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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLG
AASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAI
YNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xpl:E 231 227 1.0000 0.9827 1.0000 2.87e-169 5gin:E, 5gin:F, 5gin:M, 5gio:E, 5gio:F, 5gio:M, 5gip:E, 5gip:F, 5gip:O, 5gip:P, 3id5:B, 3id5:F, 3id6:C, 3pla:E, 3pla:F, 3pla:M, 7xpl:F
2 4df3:A 230 221 0.5286 0.5217 0.5430 7.44e-92 4df3:B
3 4by9:E 227 221 0.5110 0.5110 0.5249 1.31e-79 4by9:K, 3nmu:F, 3nmu:J, 3nvk:I, 3nvk:J
4 1g8s:A 230 219 0.4802 0.4739 0.4977 4.35e-75
5 7mqa:SC 229 227 0.4449 0.4410 0.4449 2.24e-69 2ipx:A, 7se7:A, 7se8:A, 7se8:B, 7se9:A, 7se9:B, 7sea:A, 7seb:A, 7sec:A, 7sec:B, 7sed:A
6 5oql:S 237 215 0.4537 0.4346 0.4791 3.43e-67 6rxt:CB, 6rxu:CB, 6rxv:CB, 6rxx:CB, 6rxy:CB, 6rxz:CB
7 7d4i:3B 242 209 0.4317 0.4050 0.4689 7.04e-65 7aju:CB, 7d4i:3C, 7d5s:3C, 7d5t:3B, 7d5t:3C, 7d63:3C, 6ke6:3C, 6lqp:3C, 6lqq:3C, 6lqr:3C, 6lqs:3C, 6lqt:3C, 6lqu:3C, 6lqv:3C, 7suk:SD, 5wlc:SD, 6zqd:CA, 6zqd:CB
8 1nt2:A 209 188 0.3744 0.4067 0.4521 1.66e-49
9 3cl5:A 358 87 0.1013 0.0642 0.2644 2.5
10 3cjt:A 254 72 0.1101 0.0984 0.3472 2.6 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
11 5jmd:A 646 33 0.0529 0.0186 0.3636 3.1 5jmf:A
12 8w0t:A 398 134 0.1366 0.0779 0.2313 3.3 8w0t:B, 8w0t:C, 8w0t:D, 8w0u:A, 8w0u:B, 8w0u:C, 8w0u:D, 8w0z:A, 8w0z:B, 8w0z:C, 8w0z:D, 8w0z:E, 8w0z:F, 8w0z:G, 8w0z:H
13 6kji:A 351 35 0.0485 0.0313 0.3143 3.8 6kji:B, 6kji:C
14 3o8o:E 752 77 0.0969 0.0293 0.2857 4.1 3o8o:A, 3o8o:C, 3o8o:G
15 8h9d:A 1114 40 0.0749 0.0153 0.4250 4.9
16 7rr5:T 162 92 0.1233 0.1728 0.3043 6.6
17 8oiv:A 293 32 0.0529 0.0410 0.3750 7.1 1av6:A, 8b07:A, 8b07:B, 1b42:A, 1bky:A, 8ceq:A, 8ceq:B, 8cer:A, 8cer:B, 8ces:A, 8ces:B, 8cet:A, 8cet:B, 8cev:A, 8cev:B, 8cgb:A, 4dcg:A, 1eam:A, 1eqa:A, 3er8:A, 3er8:B, 1jsz:A, 1jte:A, 1jtf:A, 3mag:A, 3mct:A, 8oiv:B, 1p39:A, 1v39:A, 1vp3:A, 1vp9:A, 1vpt:A, 2vp3:A
18 6z0p:A 242 64 0.0705 0.0661 0.2500 7.3 6z0p:B
19 1ri1:A 252 156 0.1410 0.1270 0.2051 8.0 2hv9:A, 1ri2:A, 1ri3:A, 1ri4:A, 1z3c:A
20 5thy:A 387 30 0.0441 0.0258 0.3333 8.6 5thy:B, 5thz:B, 5thz:A
21 3ayi:A 684 44 0.0661 0.0219 0.3409 9.8 3ayi:B, 3ayj:A, 3ayj:B, 3ayl:A, 3ayl:B, 2yr5:A, 2yr5:B, 2yr6:A, 2yr6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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