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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ITRLYTSYFKGELFPNQLARPLERLPRGVSLAAARKGQRPYVPLGEVAKLELQGDYLTEGGLHQEALEYYGVVAKAYELA
YPKDHPQVAGIRLKLAGAFRRTGRLTSSKANCEAVLQMLDSAVQPPLELIVEALFELGLTSEAMSDAAAGTVFEEAVALV
DMFHNSGQSHKMLRLLPRLGRRFNLNFEEKFVYFSPFDYDRVFALADQCLERAEVFYQARNDRAGVMRVLQQRKELIDKK
FFNMRDFAGRIHTMRGHWKRRAQVLTNAPTPDELLRYSPTIHQVYRDFKYELNAPIGREKEVQPGVNRVVHDMGNPYRRS
GVRSQRMFRDAEKNFEKYIRA

The query sequence (length=341) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7am2:Aj 342 342 1.0000 0.9971 0.9971 0.0 7aih:Aj, 7ane:Aj
2 6yxx:BF 346 344 0.7097 0.6994 0.7035 1.07e-167 7aoi:BF, 6hiv:BF, 6hix:BF, 6yxy:BF
3 4ap0:C 311 163 0.1056 0.1158 0.2209 0.70
4 5v4d:A 127 28 0.0293 0.0787 0.3571 1.7 5v4d:B, 5v4d:E
5 7qce:A 187 107 0.0645 0.1176 0.2056 2.1 7qce:B
6 4qko:D 133 76 0.0557 0.1429 0.2500 6.9 4qko:B, 4qko:F, 4qko:H
7 3kb8:A 201 145 0.1026 0.1741 0.2414 7.1 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
8 6g1q:B 331 49 0.0440 0.0453 0.3061 9.2 7aqm:A, 7aqm:B, 6g1p:A, 6g1p:B, 6g1q:A, 6hgz:A, 6hgz:B, 6hh3:A, 6hh3:B, 6hh4:A, 6hh4:B, 6hh5:A, 6hh5:B, 6hoz:A, 6hoz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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