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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ITHDVGIKPLNPDDFWRCTSGLPSLMKTPKIRLMPGPGLLAMPTTVDGCVRTPSLVINDLIYAYTSNLITRGCQDIGKSY
QVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNTDVYQLCSTPKVDERSDYASSGIEDIVLDIVNHDGSIST
TRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGLEHPINENAICNTTGCPGKTQRDCNQASHSPWFSDRRMVNSI
IVVDSIPKLKVWTISMRQNYWGSEGRLLLLGNKIYIYTRSTSWHSKLQLGIIDITDYSDIRIKWTWHNVLSRPGNNECPW
GHSCPDGCITGVYTDAYPLNPTGSIVSSVILDSQKSRVNPVITYSTATERVNELAIRNKTLSAGYTTTSCITHYNKGYCF
HIVEINHKSLDTFQPMLFKTEIPKSC

The query sequence (length=426) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4mza:B 437 430 0.9977 0.9725 0.9884 0.0 6c0m:A, 6c0m:B, 5kv8:A, 5kv8:B, 5kv9:B, 4mza:A, 4mze:A, 4mze:B, 1v2i:A, 1v2i:B, 1v3b:A, 1v3b:B, 1v3c:A, 1v3c:B, 1v3d:A, 1v3d:B, 1v3e:A, 1v3e:B, 4wef:A, 4wef:B, 4xjq:A, 4xjq:B, 4xjr:A, 4xjr:B
2 6jjm:A 452 425 0.2817 0.2655 0.2824 3.90e-41 5b2d:A, 5b2d:B, 6jjm:B, 6jjn:A, 6jjn:B
3 1e8u:B 449 409 0.2793 0.2650 0.2910 8.21e-41 7bwu:B, 7bwu:D, 7bwu:A, 7bwu:C, 1e8t:A, 1e8u:A, 1e8v:A, 1e8v:B, 1usr:A, 1usr:B, 1usx:A, 1usx:B, 1usx:C
4 4jf7:A 501 425 0.2911 0.2475 0.2918 2.26e-38 4jf7:D, 4jf7:B, 4jf7:C, 1z4v:A, 1z4w:A, 1z4x:A, 1z4y:A, 1z4z:A, 1z50:A
5 7ty0:D 485 431 0.2676 0.2351 0.2645 1.04e-23 8ja5:A, 7txz:B, 2vwd:A, 2vwd:B, 8xc4:B
6 6pdl:E 421 412 0.2371 0.2399 0.2451 1.22e-20 6pdl:C, 7syy:A
7 6sg8:B 381 391 0.2113 0.2362 0.2302 6.20e-17 6sg8:A
8 8tvi:A 513 385 0.1878 0.1559 0.2078 6.01e-13 8tvi:B, 8tvi:C, 8tvi:D
9 6mhc:A 244 31 0.0258 0.0451 0.3548 3.0 1eem:A, 4is0:A, 3lfl:A, 3lfl:B, 3lfl:C, 6mhb:A, 6mhb:B, 6mhb:C, 6mhb:D, 6mhb:E, 6mhb:F, 6mhc:B, 6mhd:A, 6mhd:B, 6pnm:A, 6pnn:A, 6pno:A, 5ueh:A, 5v3q:A, 3vln:A, 4yqm:A, 4yqm:B, 4yqm:C, 4yqu:A, 4yqu:B, 4yqv:A, 4yqv:B, 4yqv:C, 5yvn:A, 5yvo:A
10 5zm5:A 398 84 0.0610 0.0653 0.3095 4.6 5zm6:A, 5zm6:B, 5zm7:A
11 4cy8:A 539 50 0.0282 0.0223 0.2400 4.6 4cy8:B, 4cy8:C, 4cy8:D
12 8qll:A 237 31 0.0235 0.0422 0.3226 6.7 8qll:B
13 5mdn:A 761 112 0.0681 0.0381 0.2589 7.0 5mdn:B
14 7eto:a 1297 83 0.0493 0.0162 0.2530 9.4 7et3:a, 7etj:a
15 7fi0:A 308 67 0.0399 0.0552 0.2537 9.9 7fi1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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