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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IRWDVDIIAQSSIVHRDDDTFTLFRREKIIGPDGQILQIPLISGSSFRGVLRRVGEALTAEVLGYEDVALAKSAHPLTDE
EERNLKELLPQIAVFGGAASGRVMSGLLSVSKVLPEIAELAHLLPRPPHSTPLLPAVLSVADESPLGRFAIETLPAGTRL
QTWARLDNATEHQAAFFDNVLSTFAAHGHLGGRSAAGHGQVTATVTATALRGSLPRPTVDWVNQLADD

The query sequence (length=228) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jhy:e 228 228 1.0000 1.0000 1.0000 3.92e-165 7jhy:d, 7jhy:c, 7jhy:f, 7jhy:b, 7jhy:a
2 7qe7:K 531 71 0.1009 0.0433 0.3239 1.5 5a31:J, 5a31:K, 5g04:J, 5g04:K, 5g05:J, 5g05:K, 9gaw:Q, 9gaw:K, 3hym:B, 3hym:D, 3hym:F, 3hym:H, 3hym:J, 3hym:L, 5lcw:J, 5lcw:K, 8pkp:Q, 8pkp:K, 6q6g:Q, 6q6g:K, 6q6h:Q, 6q6h:K, 7qe7:Q, 8s4g:Q, 8s4g:K, 6tlj:J, 6tlj:K, 6tm5:J, 6tm5:K, 6tnt:J, 6tnt:K, 4ui9:J, 4ui9:K
3 7fco:A 433 51 0.0702 0.0370 0.3137 2.3 7fco:B
4 8hjt:A 197 102 0.1228 0.1421 0.2745 2.4 8hjt:B
5 2bht:A 294 45 0.0614 0.0476 0.3111 5.8 2bhs:A, 2bhs:B, 2bhs:C, 2bhs:D, 2bht:B, 2bht:C, 2bht:D, 2jc3:A, 2jc3:H, 2jc3:B, 2jc3:C, 2jc3:D, 2jc3:E, 2jc3:F, 2jc3:G, 2v03:A
6 8wpe:A 1006 137 0.1535 0.0348 0.2555 8.8 8hg1:A, 8hpa:A, 8j86:A, 8j8f:A, 8j8g:A, 8k8s:A, 8k8u:A, 5n2g:A, 8wpf:A, 8wpk:A, 8wpp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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