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BioLiP
>protein
IPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQEIQATFFYFTPNKTEDTIFLREYQTRQNQCFYNSSYLNV
QRENGTVSRYEGGREHVAHLLFLRDTKTLMFGSYLDDEKNWGLSFYADKPETTKEQLGEFYEALDCLRIPRSDVMYTDWK
KDKCEPLEKQHEKER

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3apx:A 179 175 1.0000 0.9777 1.0000 2.77e-133 3apv:A, 3apv:B, 3apw:A, 3apw:B, 7oub:B
2 3kq0:A 175 174 0.8800 0.8800 0.8851 2.29e-117
3 5ft8:A 401 54 0.1143 0.0499 0.3704 0.43 5ft4:A, 5ft4:B, 5ft5:A, 5ft5:B, 5ft6:A, 5ft6:B, 5ft8:C, 5ft8:E, 5ft8:G, 5ft8:I, 5ft8:K, 5ft8:M, 5ft8:O, 4lw2:A, 4lw2:B, 4lw2:C, 4lw4:A, 4lw4:B
4 4gah:B 195 55 0.0800 0.0718 0.2545 0.96 4gah:A
5 5x4z:N 1074 75 0.1371 0.0223 0.3200 3.0 5x4z:B, 5x51:B, 5x51:N
6 8u9r:B 1060 71 0.1257 0.0208 0.3099 3.4 8u9x:B
7 5u7x:F 412 48 0.1143 0.0485 0.4167 7.9
8 5gqv:A 755 32 0.0571 0.0132 0.3125 8.8 5gqx:A, 5gqy:A, 5gr1:A, 5gr4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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