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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IPKDLEPKHPTLWRIIYYSFGVVLLATITAAYVAEFQVILFSLGLYGLAMLLHLMMQSLFAFLEIRRVNKSELPCSFKKT
VALTIAGYQENPEYLIKCLESCKYVKYPKDKLKIILVIDGNTEDDAYMMEMFKDVFHGEDVGTYVWKGNYHTEGINMVEE
LVRNKRCVCIMQQWGGKREVMYTAFQAIGTSVDYVQVCDSDTKLDELATVEMVKVLESNDMYGAVGGDVRILNPYDSFIS
FMSSLRYWMAFNVERACQSYFDCVSCISGPLGMYRNNILQVFLEAWYRQKFLGTYCTLGDDRHLTNRVLSMGYRTKYTHK
SRAFSETPSLYLRWLNQQTRWTKSYFREWLYNAQWWHKHHIWMTYESVVSFIFPFFITATVIRLIYAGTIWNVVWLLLCI
QIMSLFKSIYACWLRGNFIMLLMSLYSMLYMTGLLPSKYFALLTLNKTGWGTSGRKKIVGNYMPILPLSIWAAVLCGGVG
YSIYMDCQNDWSTPEKQKEMYHLLYGCVGYVMYWVIMAVMYWVWVKR

The query sequence (length=527) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8smp:A 527 527 1.0000 1.0000 1.0000 0.0 8smn:A
2 8snd:A 500 501 0.2960 0.3120 0.3114 3.77e-60 8snc:A, 8sne:A, 7sp6:A, 7sp7:A, 7sp8:A, 7sp9:A, 7spa:A
3 8k3u:A 597 329 0.1252 0.1106 0.2006 0.001 8k3u:B
4 7xs6:B 729 340 0.1290 0.0933 0.2000 0.002 8k3v:A, 8k3v:B, 7xs6:A, 7xs7:B, 7xs7:A
5 8k3w:B 694 345 0.1290 0.0980 0.1971 0.007 8k3w:A, 8k3x:A, 8k3x:B
6 8k3p:A 660 345 0.1290 0.1030 0.1971 0.008 8k3p:B, 8k3t:A, 8k3t:B
7 6yv8:A 346 246 0.1044 0.1590 0.2236 0.012 6yv8:B, 6yv9:A, 6yv9:B
8 4jc0:A 424 112 0.0550 0.0684 0.2589 0.14 4jc0:B
9 7stm:A 801 357 0.1423 0.0936 0.2101 0.54 7stm:B, 7stn:A, 7stn:B, 7sto:B, 7sto:A
10 8k3b:A 281 57 0.0342 0.0641 0.3158 2.5 8ju9:A
11 7kyc:A 1178 64 0.0323 0.0144 0.2656 5.0 7drx:A, 7dsh:A, 7dsi:A, 7f7f:A, 7ky6:A, 7kyb:A, 7whv:A, 7whw:A
12 1d8c:A 709 30 0.0209 0.0155 0.3667 8.8 1p7t:A, 1p7t:B
13 4hg6:A 747 58 0.0323 0.0228 0.2931 9.1 5eiy:A, 5ej1:A, 5ejz:A, 4p00:A, 4p02:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218