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BioLiP
>protein
IKLYPLKKLEIILEGAHKEFATDLLDRAGVKGYTIVGNLSGKGSHMFNEDDALIMIIAAVPEELVGPLLEGFQPFFEAHS
GVVFVHDIQVGRPIKFRN

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5d4o:A 106 105 1.0000 0.9245 0.9333 8.10e-65 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
2 5d4n:B 90 93 0.8878 0.9667 0.9355 1.56e-55 5drk:C
3 7r30:B 102 88 0.2143 0.2059 0.2386 0.14 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
4 1rcq:A 357 43 0.1327 0.0364 0.3023 0.15
5 7cyf:D 109 41 0.1633 0.1468 0.3902 0.17 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
6 7o4x:A 103 64 0.2245 0.2136 0.3438 1.6
7 3h7v:A 320 50 0.1837 0.0563 0.3600 3.4
8 7nrr:AAA 329 38 0.1429 0.0426 0.3684 4.4 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
9 8vhh:A 389 38 0.1429 0.0360 0.3684 4.9 8egy:A, 8egy:B, 8egz:A, 8egz:B, 8eh0:A, 8eh0:B, 8eh1:A, 8eh1:B, 8vhh:B
10 1r0z:C 277 38 0.1429 0.0505 0.3684 5.1 1q3h:A, 1q3h:B, 1q3h:C, 1q3h:D, 1r0x:A, 1r0x:B, 1r0x:C, 1r0x:D, 1r0y:A, 1r0y:B, 1r0y:C, 1r0y:D, 1r0z:A, 1r0z:B, 1r0z:D, 1r10:A, 1r10:B, 3si7:A, 3si7:B, 3si7:C, 3si7:D, 1xf9:A, 1xf9:B, 1xf9:C, 1xf9:D, 1xfa:A, 1xfa:B
11 7bz3:C 335 24 0.1122 0.0328 0.4583 5.6 7bz3:D
12 6q0m:B 94 65 0.1939 0.2021 0.2923 5.6
13 6j4n:A 372 24 0.1122 0.0296 0.4583 5.7 7byq:A, 7byq:B, 7byq:C, 7byq:D, 7bz1:A, 7bz1:B, 7bz1:C, 7bz1:D, 7bz3:A, 7bz3:B, 7bz4:A, 7bz4:B, 7bz4:C, 7bz4:D, 7bzi:G, 7bzi:B, 7bzi:C, 7bzi:F, 7bzi:E, 7bzi:D, 7bzi:A, 7bzi:H, 6j4n:B, 6j4n:C, 6j4n:D, 6j4n:E, 6j4n:F, 6j4n:G, 6j4n:H, 6jkw:A, 6jkw:B, 6jkw:C, 6jkw:D, 6jkw:E, 6jkw:F, 6jkw:G, 6jkw:H, 7wi1:A, 7wi1:G, 7wi1:C, 7wi1:E, 7wi1:D, 7wi1:F, 7wi1:B, 7wi1:H
14 5m0p:A 424 31 0.1224 0.0283 0.3871 6.5 4l40:A, 4l54:A, 5m0n:A, 5m0o:A, 5m0o:C, 5m0p:B
15 6wjm:A 269 39 0.1327 0.0483 0.3333 6.8
16 3co8:A 360 35 0.1224 0.0333 0.3429 7.8 3co8:B
17 5y78:A 305 31 0.1429 0.0459 0.4516 9.4 5y78:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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