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BioLiP
>protein
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGPSCKFMHPRF

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7k95:A 53 49 1.0000 0.9245 1.0000 2.75e-32 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
2 6dnh:C 117 46 0.3061 0.1282 0.3261 7.29e-04 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
3 2d9m:A 69 20 0.2653 0.1884 0.6500 0.003
4 1rgo:A 70 56 0.3673 0.2571 0.3214 0.014
5 6eoj:B 94 40 0.2449 0.1277 0.3000 0.050 7zgp:B, 7zgr:B
6 2cqe:A 98 26 0.2041 0.1020 0.3846 0.14
7 2cqe:A 98 43 0.2653 0.1327 0.3023 4.2
8 5elk:A 121 53 0.3673 0.1488 0.3396 0.14
9 2d9n:A 77 23 0.1837 0.1169 0.3913 0.26 2rhk:C
10 6ff4:t 172 23 0.2653 0.0756 0.5652 0.47 8ch6:Z, 6ff7:t, 7qtt:Z
11 7dvq:M 191 23 0.2653 0.0681 0.5652 0.50 8i0r:K, 8i0s:K, 8i0t:K, 5z56:M, 5z58:M
12 7dco:M 176 23 0.2245 0.0625 0.4783 0.60 5gm6:a
13 6pmg:X 35 24 0.2245 0.3143 0.4583 0.72
14 3jb9:Y 261 19 0.1429 0.0268 0.3684 1.5
15 3jb9:Y 261 19 0.1429 0.0268 0.3684 7.1
16 5elh:A 142 23 0.2245 0.0775 0.4783 1.6 5elh:B
17 2fc6:A 50 32 0.2653 0.2600 0.4062 1.8
18 7dco:R 261 19 0.1429 0.0268 0.3684 2.2 7b9v:M, 6bk8:G, 6exn:M, 5gm6:R, 5gmk:R, 6j6g:R, 6j6h:R, 6j6n:R, 6j6q:R, 5lj3:M, 5lj5:M, 5mps:M, 5mq0:M, 3tp2:A, 3tp2:B, 3u1l:A, 3u1m:A, 5wsg:R, 5y88:N, 5ylz:N
19 7dco:R 261 19 0.1429 0.0268 0.3684 9.7 7b9v:M, 6bk8:G, 6exn:M, 5gm6:R, 5gmk:R, 6j6g:R, 6j6h:R, 6j6n:R, 6j6q:R, 5lj3:M, 5lj5:M, 5mps:M, 5mq0:M, 3tp2:A, 3tp2:B, 3u1l:A, 3u1m:A, 5wsg:R, 5y88:N, 5ylz:N
20 5lqw:F 218 19 0.1429 0.0321 0.3684 3.1
21 6fdz:U 265 39 0.2653 0.0491 0.3333 4.0 6fdy:U
22 4pde:A 244 21 0.1837 0.0369 0.4286 4.9
23 7mq8:LH 746 32 0.2245 0.0147 0.3438 5.1 7mq9:LH, 7mqa:LH
24 5aij:A 630 30 0.2449 0.0190 0.4000 5.2 5a23:A, 5a23:B, 5a23:C, 5a23:D, 5ajl:A, 5ajl:B, 2cfu:A, 2cfz:A, 2cg2:A, 2cg3:A
25 8ch6:U 295 21 0.1633 0.0271 0.3810 7.1 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
26 6f59:B 185 11 0.1224 0.0324 0.5455 7.4 8a7n:A, 8cdn:A, 6f58:A, 6f58:B, 6f59:A, 8fmu:A, 8fmu:B, 5qrf:A, 5qrg:A, 5qrh:A, 5qri:A, 5qrj:A, 5qrk:A, 5qrl:A, 5qrm:A, 5qrn:A, 5qro:A, 5qrq:A, 5qrr:A, 5qrs:A, 5qrt:A, 5qru:A, 5qrv:A, 5qrw:A, 5qrx:A, 5qry:A, 5qrz:A, 5qs0:A, 5qs1:A, 5qs3:A, 5qs4:A, 5qs5:A, 5qs6:A, 5qs7:A, 5qs9:A, 5qsa:A, 5qsb:A, 5qsc:A, 5qsd:A, 5qse:A, 5qsf:A, 5qsg:A, 5qsh:A, 5qsj:A, 5qsk:A, 5qsl:A, 5qt0:A, 1xbr:A, 1xbr:B, 7zk2:A, 6zu8:A
27 3lqu:A 205 30 0.2449 0.0585 0.4000 7.7 1g58:A, 3lrj:A, 3lrj:B, 3lrj:C, 3lrj:D, 3ls6:A, 3ls6:B
28 4p6p:B 218 33 0.2041 0.0459 0.3030 7.7 4p6c:A, 4p6c:B, 4p6d:A, 4p6d:B, 4p6p:A, 4p77:A, 4p77:B, 4p8e:A, 4p8e:B, 7uf0:A, 7uf1:A, 7uf2:A, 7uf3:A, 7uf4:A, 7uf5:A
29 7ui7:A 613 14 0.1633 0.0131 0.5714 8.1 7ui6:A, 7ui6:B
30 7zvj:B 587 14 0.1633 0.0136 0.5714 8.4 7zvj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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