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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IIRRYLVKQVVSTSLVVIALLTLIMMGGRLIKYFGVAAQGRLDAGVLFSIIGYRMPEFLTLILPLGFFIGLMLVFGRLYV
DHEMAVLNGSGISRIRLGQLLIPLALVFLVIQGILMLWMTPWGLRQFDQLSSSQAVRTGFDLVRPKEFISSGPYTIYAGD
LSEDRKNLKDIFFYQDVMILAKEATRNVVDLIQGRRYEIYSQAEFQRYRLRLKVEALPSSKLWNKWNDPVIASEMGWRVF
GPFTIVIALMMAVALCEVSPRQGRYYRLIPAIFIFASLIVLLIAIRTRISRDELGVWAYPAALAVYGIAAALFSRK

The query sequence (length=316) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8frl:F 316 316 1.0000 1.0000 1.0000 0.0 8frm:F, 8fro:F, 8ufg:F, 8ufh:F
2 8frn:F 289 316 0.9146 1.0000 0.9146 0.0
3 8frp:F 223 136 0.3797 0.5381 0.8824 2.23e-73
4 8frp:F 223 104 0.3291 0.4664 1.0000 2.07e-68
5 6mhu:F 311 301 0.2500 0.2540 0.2625 5.03e-23
6 7efo:F 219 135 0.1361 0.1963 0.3185 2.73e-11
7 7efo:F 219 83 0.0728 0.1050 0.2771 4.52e-04
8 6s8h:F 239 134 0.1361 0.1799 0.3209 2.85e-10 6s8g:F, 6s8n:F
9 6s8h:F 239 70 0.0665 0.0879 0.3000 4.37e-04 6s8g:F, 6s8n:F
10 6mi7:F 217 130 0.1329 0.1935 0.3231 1.25e-09
11 6mi7:F 217 87 0.0823 0.1198 0.2989 1.57e-05
12 8frl:G 338 135 0.1139 0.1065 0.2667 2.98e-04 8frm:G, 8fro:G, 8ufg:G, 8ufh:G
13 8frn:G 297 132 0.1139 0.1212 0.2727 6.80e-04
14 1grx:A 85 53 0.0601 0.2235 0.3585 0.084 1qfn:A
15 3czx:A 182 92 0.0665 0.1154 0.2283 4.6 3czx:B, 3czx:C, 3czx:D
16 7kgg:C 1020 63 0.0538 0.0167 0.2698 6.1 7kgh:C, 7kgi:A, 7kgi:C
17 7ujl:A 161 34 0.0411 0.0807 0.3824 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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