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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
IGIRLTLPPPKVVDRWNEKRAMFGVYDNIGILGNFEKHPKELIRGPIWLRGWKGNELQRCIRKRKMVGSRMFADDLHNLN
KRIRYLYKHFNRHGKF

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a5f:i3 97 96 1.0000 0.9897 1.0000 1.34e-67 7a5g:i3, 7a5h:i, 7a5i:i3, 7a5j:i, 7a5k:i3, 8any:i, 6i9r:i, 3j7y:i, 3j9m:i, 8k2a:Ly, 8k2b:Ly, 7l08:i, 7l20:i, 6nu2:i, 6nu3:i, 7o9k:i, 7o9m:i, 7odr:i, 7ods:i, 7odt:i, 7of0:i, 7of2:i, 7of3:i, 7of4:i, 7of5:i, 7of6:i, 7of7:i, 7og4:i, 7oi6:i, 7oi7:i, 7oi8:i, 7oi9:i, 7oia:i, 7oib:i, 7oic:i, 7oid:i, 7oie:i, 8oir:Bz, 8oit:Bz, 5ool:i, 5oom:i, 7pd3:i, 8pk0:i, 7po4:i, 7qh6:i, 7qh7:i, 7qi4:i, 7qi5:i, 7qi6:i, 8qsj:i, 8qu5:i, 6vlz:i, 6vmi:i, 8xt0:Ly, 8xt1:Ly, 8xt2:Ly, 8xt3:Ly, 6zm5:i, 6zm6:i, 6zs9:i, 6zsa:i, 6zsb:i, 6zsc:i, 6zsd:i, 6zse:i, 6zsg:i
2 5aj4:Bn 97 94 0.8750 0.8660 0.8936 3.55e-60 6gaw:Bn, 6gb2:Bn, 7nqh:Bn, 7nql:Bn, 7nsh:Bn, 7nsi:Bn, 7nsj:Bn, 8oin:Bz, 8oiq:Bz, 6ydp:Bn, 6ydw:Bn
3 8st7:A 212 46 0.1667 0.0755 0.3478 5.9 8st7:C
4 8d49:A 1072 34 0.1458 0.0131 0.4118 7.8
5 7dvq:R 241 31 0.0938 0.0373 0.2903 8.4
6 8wr4:B 1442 60 0.1875 0.0125 0.3000 8.5
7 8wmm:B 1212 60 0.1875 0.0149 0.3000 8.5 8iyq:A, 8wmh:A, 8wmm:A, 8wmn:A, 8wmn:B, 8wr4:A
8 8d4a:A 1207 34 0.1458 0.0116 0.4118 8.8 8d4b:A
9 6wqc:A 293 72 0.1771 0.0580 0.2361 9.5 6wqb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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