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BioLiP
>protein
IEMLKTLPPTLREKKRYIAFKILYDEELKEGEVVNLIRKAVLEYYGSWGTSKANPWLVYYDFPYGILRCQRDNVDYVKAS
LILIREFKEKPVNIICLGVSGTIRKAKIKFLGIKKPKRWFVIRRER

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6k0a:A 126 126 1.0000 1.0000 1.0000 1.62e-88 6k0a:B, 6k0b:A, 6k0b:B
2 6w6v:E 169 124 0.2619 0.1953 0.2661 2.18e-04 6agb:E, 6ah3:E, 7c79:E, 7c7a:E
3 3uow:B 477 65 0.1508 0.0398 0.2923 0.59
4 3wwh:A 329 63 0.1270 0.0486 0.2540 0.84 5fr9:A, 5fr9:B, 5fr9:C, 5fr9:D, 5fr9:E, 5fr9:F, 5fr9:G, 5fr9:H, 5fr9:I, 5fr9:J, 5fr9:K, 5fr9:L, 3wwi:A, 3wwi:B, 3wwi:C, 3wwi:D, 3wwi:E, 3wwi:F, 3wwi:G, 3wwi:H, 3wwi:I, 3wwi:J, 3wwi:K, 3wwi:L, 3wwj:A, 3wwj:B, 3wwj:C, 3wwj:D, 3wwj:E, 3wwj:F, 3wwj:G, 3wwj:H, 3wwj:I, 3wwj:J, 3wwj:K, 3wwj:L
5 2qby:A 366 33 0.1032 0.0355 0.3939 2.3
6 8kde:A 309 70 0.1190 0.0485 0.2143 3.6 8r2i:A, 8zee:A
7 6kac:A 336 70 0.1190 0.0446 0.2143 4.4 8c29:A, 8c29:a, 8iwh:A, 8iwh:a, 8j5k:A, 8j5k:a, 6jlu:A, 6jlu:a, 6kac:a, 6kad:A, 6kad:a, 6kaf:a, 6kaf:A, 5mdx:a, 7oui:A, 7oui:a, 5xnl:A, 5xnl:a, 5xnm:A, 5xnm:a, 6yp7:a, 6yp7:A
8 4wio:A 525 67 0.1587 0.0381 0.2985 5.0 3uow:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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