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BioLiP
>protein
IDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQ

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hih:G 57 53 1.0000 0.9298 1.0000 1.24e-33 6ccv:T, 5tw1:T, 5vi8:T, 6vvs:T, 6vvv:T
2 8dy9:B 319 51 0.7925 0.1317 0.8235 3.56e-24
3 3iyd:A 322 48 0.5283 0.0870 0.5833 6.38e-14 6b6h:I, 7beg:B, 7c17:A, 7c97:K, 7chw:K, 5ciz:B, 7dy6:K, 8ftd:R, 8igr:G, 7khc:A, 7khc:B, 1lb2:B, 1lb2:E, 7mkd:R, 7mkj:R, 3n4m:B, 3n4m:C, 6n4c:A, 6n4c:B, 3n97:B, 3n97:C, 6oul:R, 6psq:M, 6psr:M, 6pss:M, 6pst:M, 6psu:M, 6psv:M, 6psw:M, 8tom:M, 8u3b:A, 7w5x:A, 7w5y:A, 8y6u:I
4 7ye1:A 307 48 0.4151 0.0717 0.4583 3.43e-11 7ye2:A
5 2g37:B 300 37 0.2830 0.0500 0.4054 0.16 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
6 2g37:B 300 35 0.2453 0.0433 0.3714 7.6 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
7 6lbr:A 519 46 0.3208 0.0328 0.3696 1.5 6lbr:B
8 1o5k:A 295 41 0.2453 0.0441 0.3171 2.3
9 8hkr:B 384 27 0.1887 0.0260 0.3704 5.9 8hkr:A
10 5tr1:A 606 13 0.1509 0.0132 0.6154 8.2 5tr1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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