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BioLiP
>protein
ICPGFLQVLEALLLGSESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTSPLC

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1utr:A 68 68 1.0000 1.0000 1.0000 8.94e-45 1utr:B
2 2ejn:A 146 69 0.2941 0.1370 0.2899 0.012 2ejn:B
3 6y3z:P 348 35 0.2059 0.0402 0.4000 0.095
4 8e9h:D 407 48 0.2647 0.0442 0.3750 0.74 8e9g:D
5 1xqp:A 252 66 0.2647 0.0714 0.2727 3.9
6 8jal:B 573 45 0.2353 0.0279 0.3556 5.7 8jal:A, 8jaq:A, 8jaq:B, 8jaq:J, 8jaq:K, 8jar:A, 8jar:B, 8jas:A, 8jas:B, 8jas:K, 8jas:J, 8jau:A, 8jau:B, 8jav:A, 8jav:B, 8jav:J, 8jav:K
7 3iuu:A 494 24 0.1324 0.0182 0.3750 6.5
8 3q87:A 122 32 0.1912 0.1066 0.4062 6.6
9 6co9:A 295 21 0.1471 0.0339 0.4762 8.1 6coj:A
10 8q7d:p 441 39 0.1618 0.0249 0.2821 8.5 8qek:p, 8qek:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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