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BioLiP
>protein
HTVVLTVTGEPCHFPFQYHRQLYHKCTHKGRPGPQPWCATTPNFDQDQRWGYCLE

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7prj:A 55 55 1.0000 1.0000 1.0000 1.23e-37
2 1gxd:A 624 53 0.4364 0.0385 0.4528 5.11e-12 1ck7:A, 1eak:A, 1eak:B, 1eak:D, 1eak:C, 1gen:A, 1gxd:B, 1rtg:A
3 1gxd:A 624 54 0.3818 0.0337 0.3889 3.47e-10 1ck7:A, 1eak:A, 1eak:B, 1eak:D, 1eak:C, 1gen:A, 1gxd:B, 1rtg:A
4 1gxd:A 624 48 0.3636 0.0321 0.4167 4.56e-09 1ck7:A, 1eak:A, 1eak:B, 1eak:D, 1eak:C, 1gen:A, 1gxd:B, 1rtg:A
5 5e4l:A 428 53 0.4182 0.0537 0.4340 5.43e-12
6 5e4l:B 386 53 0.4182 0.0596 0.4340 6.80e-12
7 5e4k:A 424 53 0.4182 0.0542 0.4340 6.93e-12
8 1l6j:A 405 46 0.4182 0.0568 0.5000 1.54e-11
9 1l6j:A 405 48 0.4000 0.0543 0.4583 2.44e-11
10 1l6j:A 405 48 0.4000 0.0543 0.4583 1.05e-10
11 3m7p:A 301 58 0.4545 0.0831 0.4310 1.11e-10
12 3m7p:A 301 48 0.3636 0.0664 0.4167 4.02e-10
13 5xts:A 460 53 0.3636 0.0435 0.3774 4.95e-09 5xtw:A, 5xtw:C, 5xtw:D, 5xtw:E, 5xtw:F, 5xtw:H
14 1h8p:A 88 42 0.3273 0.2045 0.4286 2.17e-06 1h8p:B
15 1h8p:A 88 46 0.3091 0.1932 0.3696 0.11 1h8p:B
16 5ch7:B 329 38 0.2727 0.0456 0.3947 0.24 5ch7:D, 5ch7:F, 5chc:B, 5chc:D, 5chc:F, 5e7o:B, 5e7o:D, 5e7o:F, 5e7o:H, 5e7o:J, 5e7o:L, 4ydd:B, 4ydd:D, 4ydd:F
17 6o0g:B 530 44 0.2909 0.0302 0.3636 0.26 5eso:A, 6o0n:C, 6o0n:D
18 8j4u:B 401 36 0.2000 0.0274 0.3056 0.62 8j4u:A, 8j4u:C, 8j4u:D, 8j4u:E, 8j4u:F, 8j4u:G, 8j4u:H, 8j4u:I, 8j4u:J, 8j4u:K, 8j4u:L, 8su9:A, 8su9:B, 8su9:C, 8su9:D, 8su9:E, 8su9:F, 8su9:G, 8su9:H, 8su9:I, 8su9:J, 8su9:K, 8su9:L, 8sub:A, 8sub:B, 8sub:C, 8sub:D, 8sub:E, 8sub:F, 8sub:G, 8sub:H, 8sub:I, 8sub:J, 8sub:K, 8sub:L, 8suw:A, 8suw:B, 8suw:C, 8suw:D, 8suw:E, 8suw:F, 8suw:G, 8suw:H, 8suw:I, 8suw:J, 8suw:K, 8suw:L, 8sxx:A, 8sxx:B, 8sxx:C, 8sxx:D, 8sxx:E, 8sxx:F, 8sxx:G, 8sxx:H, 8sxx:I, 8sxx:J, 8sxx:K, 8sxx:L, 8uae:A, 8uae:B, 8uae:C, 8uae:D, 8uae:E, 8uae:F, 8uae:G, 8uae:H, 8uae:I, 8uae:J, 8uae:K, 8uae:L, 8uaf:A, 8uaf:B, 8uaf:C, 8uaf:D, 8uaf:E, 8uaf:F, 8uaf:G, 8uaf:H, 8uaf:I, 8uaf:J, 8uaf:K, 8uaf:L
19 5ess:A 551 48 0.2909 0.0290 0.3333 1.3 5esd:A, 5esd:B, 5esd:C, 5esd:D, 5eso:D, 5eso:B, 5eso:C, 5ess:B, 5ess:C, 5ess:D, 5esu:A, 5esu:B, 5esu:C, 5esu:D, 6o04:A, 6o04:D, 6o04:B, 6o04:C, 6o0g:A, 6o0g:D, 6o0g:C, 6o0j:A, 6o0j:D, 6o0j:B, 6o0j:C, 6o0n:A, 6o0n:B
20 1wu5:A 376 23 0.2000 0.0293 0.4783 1.5 1wu6:A
21 1dgj:A 906 19 0.1455 0.0088 0.4211 1.7
22 6pmp:C 617 20 0.1818 0.0162 0.5000 4.0 6pmp:A, 6pmp:B, 6pmp:D
23 4ijd:A 215 18 0.1636 0.0419 0.5000 4.0 4ijd:B, 6nm4:A, 6nm4:B
24 6egv:B 239 24 0.2000 0.0460 0.4583 5.5 6egx:B, 6eh1:B, 6eiw:B, 5lsf:B, 5oyp:B
25 2pv0:B 347 27 0.2000 0.0317 0.4074 6.2 2pv0:A, 2pv0:C, 2pvc:B, 2pvc:A, 2pvc:C
26 7dfa:A 363 14 0.1636 0.0248 0.6429 7.1 8as2:A, 8as3:A, 7df9:A, 7dfb:A, 7dfc:A, 8go8:A, 8go8:B, 8gp3:A, 8gp3:B, 8hsv:A, 8hsv:B, 8i0n:B, 8i0n:A, 8i0q:B, 8i0q:A, 8j8z:A, 8j8z:B, 4jqi:A, 8jrv:A, 6ni2:B, 7r0j:C, 6up7:B, 8wrz:A, 1zsh:A
27 7am2:BU 463 32 0.1818 0.0216 0.3125 7.3
28 8j8v:A 365 19 0.1636 0.0247 0.4737 7.5 8go9:A, 8go9:F, 8goc:A, 8goc:B, 8goc:C, 8goo:A, 8goo:B, 8goo:C, 8i0z:A, 8i0z:B, 8i0z:C, 8i10:A, 8i10:B, 8i10:C, 8j8r:A, 8j8r:B, 8j8r:C, 8j8v:F, 6k3f:A, 6k3f:B, 6k3f:C, 6k3f:D, 6k3f:E, 6k3f:F, 5tv1:A
29 4c1q:A 173 18 0.1455 0.0462 0.4444 9.6 4c1q:B
30 4g7a:B 225 21 0.1273 0.0311 0.3333 9.8 4g7a:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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