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BioLiP
>protein
HTKSVYDNGETLDISLPIHPKSHIPQGKQDRWVVKLPDFLDINAEPFDPRPFEMNVKTHEDKNQELLDKLIAVNTVRWRY
AKSETGGIFKETNSQIIQWEDGTYSLRVGSEIFDMFTTNTDDNYLVSEHNEEGILMTESTLSKSVKLVPASFQSTTHQKL
AKALSAKQKKESYARSVVTKEDPEERQRRLESQENERYRLERRRKQAE

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7xn7:u 208 208 1.0000 1.0000 1.0000 5.43e-157 7xse:u, 7xsx:u, 7xt7:u, 7xti:u
2 4m6t:A 177 91 0.1779 0.2090 0.4066 3.39e-17
3 7x2e:A 163 130 0.1779 0.2270 0.2846 0.80 2kbs:A
4 8jnp:A 390 86 0.1202 0.0641 0.2907 0.97 8jnq:A
5 1hm8:A 458 67 0.0913 0.0415 0.2836 2.4 4aaw:A, 4ac3:A, 1g97:A, 1hm8:B, 1hm9:A, 1hm9:B, 7kr9:A
6 3zqe:A 272 51 0.0865 0.0662 0.3529 4.7 7agx:2F, 7agx:2K
7 2a9g:D 406 104 0.1250 0.0640 0.2500 6.2 2a9g:A, 2a9g:B, 2a9g:C
8 7ckq:C 1061 92 0.1202 0.0236 0.2717 7.7
9 6wvj:C 1117 92 0.1202 0.0224 0.2717 7.7
10 7f75:C 1133 92 0.1202 0.0221 0.2717 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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