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BioLiP
>protein
HPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKVGENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDE

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6lab:V 109 76 1.0000 0.6972 1.0000 2.58e-51 8aag:Z, 7cow:S, 7cow:T, 7dbp:K, 7k5x:U, 6la2:S, 6la2:T, 6la8:S, 6la9:S, 6la9:T, 6lab:U, 5nl0:Z, 8tb9:A, 7xvl:o, 7xx6:o, 7xx6:p
2 8xjv:Aq 190 76 0.8289 0.3316 0.8289 1.41e-41 4qlc:U, 5wcu:U, 5wcu:V, 8xjv:Ah, 8xjv:Ai, 8xjv:Aj, 8xjv:Ak, 8xjv:Al, 8xjv:Am, 8xjv:An, 8xjv:Ao, 8xjv:Ap, 8xjv:Ar, 8xjv:As, 7xvm:U, 7xvm:V
3 7c0j:B 62 71 0.5132 0.6290 0.5493 2.73e-15 7c0j:A
4 7xx5:U 78 73 0.4342 0.4231 0.4521 2.05e-11 8h0v:u, 8h0w:u, 8h1t:K, 7k5y:U, 7pet:u, 7pet:s, 7peu:u, 7pex:u, 7pez:s, 7pf0:u, 7pf0:U, 7pf2:U, 7pf3:s, 7pf5:u, 7pf6:U, 7pfa:U, 7pfa:u, 7pfc:U, 7pfd:U, 7pfe:u, 7pft:U, 7pft:u, 7pft:S, 7pfu:U, 7pfu:S, 7pfv:U, 7pfw:u, 7pfx:S, 8vg2:U
5 7xx7:U 213 70 0.3684 0.1315 0.4000 9.43e-06 7k60:U, 7k63:U, 6l9z:S, 8yti:U
6 7kbf:K 78 80 0.2763 0.2692 0.2625 0.020
7 5n6u:A 811 31 0.1447 0.0136 0.3548 1.5 5n6u:B, 5n6u:C, 5n6u:D
8 5b6e:A 319 55 0.2237 0.0533 0.3091 1.7 5b6d:A, 5b6d:B, 5b6e:B, 5jp9:A, 5jp9:B
9 6c25:A 394 25 0.1184 0.0228 0.3600 3.2
10 5ljf:A 321 76 0.2500 0.0592 0.2500 3.4 5ljf:B, 4m24:A, 7p6h:A, 7p6h:B, 7p6j:A, 7p6j:B, 7p6j:C, 7p6j:D, 6zz3:A, 6zz3:B, 6zz3:C, 6zz3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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