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BioLiP
>protein
HMSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEA
NAA

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5fvl:A 83 83 1.0000 1.0000 1.0000 1.58e-56 5fvk:A, 5fvk:B, 5fvl:B, 4niq:A, 4niq:B
2 4u7y:A 83 81 0.4458 0.4458 0.4568 2.17e-14 2jqk:A
3 2k3w:A 73 69 0.3976 0.4521 0.4783 3.64e-13 2jq9:A
4 2ymb:D 231 69 0.2651 0.0952 0.3188 3.34e-09 4a5x:A, 4a5x:B, 2ymb:C
5 1chm:A 401 34 0.1566 0.0324 0.3824 0.62 1chm:B
6 6enz:A 487 43 0.1687 0.0287 0.3256 0.91 6enz:B
7 4v7e:BY 138 64 0.2289 0.1377 0.2969 3.7 8ip8:ba, 8ip9:ba, 8ipa:ba, 8ipb:ba, 8jiw:BY, 4v3p:SU
8 6gne:B 494 28 0.1566 0.0263 0.4643 4.4 6gne:A
9 6dql:A 227 50 0.1807 0.0661 0.3000 6.8
10 6p2l:A 685 59 0.2169 0.0263 0.3051 8.3
11 5mul:A 378 49 0.1928 0.0423 0.3265 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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