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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HHMPRSVTADASGSFLTLTFEDGSESRFHAIWLRDNALDPETRSPGNGQRLITIGDIPADTRISTALVDDGALTVTFAPE
GKTVTFPGKWLKSNAYDTDQSSEVGRTSPDVETWDSSQPAPAFDWNEVQSDPKAKRDWLDAIARLGFAKLVNGPVREGAL
IECASMFGFVRETNYGKYFEVRTEVNPTNLAYTGLGLQAHTDNPYRDPVPSLQILYCLENSAEGGDSIVVDGFRAAERLR
DEDPEGFALLAGNPARFEYKGSDGVHLRARRPMIELSPDGEMIAIRFNNRSSAPFVDIPFEKMEAYYAAYRRLGEFIDDP
EMGVSFKLEPGESFIVDNTRVLHARLGYSGSGSRWLQGCYADKDGLFSTLNVLNAQLG

The query sequence (length=378) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6npb:B 378 378 1.0000 1.0000 1.0000 0.0 6npb:A, 6npc:A, 6npc:B, 6npd:A, 6npd:B
2 3o2g:A 386 371 0.2672 0.2617 0.2722 1.02e-55 4bg1:A, 4bgk:A, 4bgm:A, 4bhf:A, 4bhg:A, 4bhi:A, 4c5w:A, 4c8r:A, 4c8r:B, 4c8r:C, 4c8r:D, 4c8r:E, 4c8r:F, 4cwd:A, 3ms5:A, 3n6w:A
3 7tcl:X 259 189 0.0979 0.1429 0.1958 0.005
4 1ds1:A 323 178 0.1296 0.1517 0.2753 0.014 1drt:A, 1dry:A, 1gvg:A
5 6vwq:A 325 47 0.0450 0.0523 0.3617 0.15 6vwr:A
6 5eqn:A 270 144 0.0979 0.1370 0.2569 0.15 5eqn:B
7 6edh:A 281 163 0.1058 0.1423 0.2454 0.25 6edh:B, 1gqw:A, 1gqw:B, 1gy9:A, 1gy9:B, 1os7:A, 1os7:B, 1os7:C, 1os7:D
8 8qjd:A 1037 88 0.0688 0.0251 0.2955 0.32 8qjd:B
9 7qte:B 284 187 0.1085 0.1444 0.2193 0.45 7qtd:A, 7qtd:B, 7qtd:C, 7qtd:D, 7qte:A, 7qtg:A, 7qtg:B
10 5vc7:A 544 42 0.0476 0.0331 0.4286 0.69 5vc7:C, 5vc7:D, 5vc7:E, 5vc7:F, 5vc7:G
11 7n7v:A 321 140 0.0952 0.1121 0.2571 0.80 7n7v:B
12 6daw:A 342 40 0.0344 0.0380 0.3250 0.80 6daw:B
13 1nx4:C 250 38 0.0370 0.0560 0.3684 1.3 1nx4:A, 1nx8:A, 1nx8:C
14 4oj8:B 271 38 0.0370 0.0517 0.3684 1.5 1nx4:B, 1nx8:B, 4oj8:A, 4oj8:C
15 2og6:A 323 59 0.0529 0.0619 0.3390 1.5 2og7:A
16 1i9z:A 336 69 0.0556 0.0625 0.3043 1.7
17 5x6y:B 694 219 0.1323 0.0720 0.2283 1.9
18 6f2a:C 326 77 0.0582 0.0675 0.2857 3.1 6f2a:A, 6f2a:B, 6f2a:D, 6f2b:A, 6f2b:B, 6f2b:C, 6f2b:D, 6f6j:A, 6f6j:B, 6f6j:C, 6f6j:D
19 2q4a:B 322 132 0.0847 0.0994 0.2424 3.4 2q4a:A, 1y0z:A, 1y0z:B
20 8g27:I 720 73 0.0582 0.0306 0.3014 3.6 8g27:C, 8g27:D, 8g2j:C, 8g2j:D, 8g2j:I, 6wlb:A, 6wlb:C, 6wlb:B
21 1bso:A 162 55 0.0503 0.1173 0.3455 3.8 1b0o:A, 7bf7:AAA, 7bf8:BBB, 7bf9:AAA, 4dq3:A, 4dq4:A, 7er3:A, 7er3:B, 7er3:C, 7er3:D, 6ge7:A, 6gf9:A, 6gfs:A, 6ghh:A, 2gj5:A, 4gny:A, 1gx8:A, 1gx9:A, 1gxa:A, 4ib6:A, 4ib7:A, 4ib8:A, 4ib9:A, 4iba:A, 4kii:A, 7kot:A, 7kp5:AA1, 7kp5:BA1, 5lke:A, 5lkf:A, 4lzu:A, 4lzv:A, 6nkq:B, 3nq9:A, 5nuj:A, 5nuk:A, 5num:A, 5nun:A, 4omw:C, 4omw:D, 4omx:A, 7q19:AAA, 7q2n:AAA, 7q2n:BBB, 7q2o:AAA, 7q2o:BBB, 7q2p:AAA, 7q2p:BBB, 6t42:AAA, 6t44:AAA, 6t44:BBB, 3uew:A, 7wql:A, 7wql:B, 4y0p:A, 4y0q:A, 4y0r:A, 4y0s:A, 5y5c:A, 5y5c:B, 7z9z:AAA, 7za0:AAA, 7zcd:AAA
22 7d5k:A 727 80 0.0635 0.0330 0.3000 3.9 7d5k:B, 7d5k:C
23 1a0c:A 437 39 0.0317 0.0275 0.3077 4.3 1a0c:B, 1a0c:C, 1a0c:D
24 4v6a:AV 176 75 0.0582 0.1250 0.2933 4.4 4v6a:CV
25 8a6x:B 368 48 0.0397 0.0408 0.3125 6.0 8a3u:A, 8a52:A, 8a52:B, 8a6x:A, 8a7f:A, 8a7f:B, 8a7h:A, 8a7h:B
26 1ohf:C 590 101 0.0741 0.0475 0.2772 7.0 7anm:A, 7anm:B, 7anm:C, 1ohf:A, 1ohf:B, 1ohf:D
27 2gys:B 406 114 0.0661 0.0616 0.2193 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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