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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HHHMSQEITLGNIKIGGNNPVFIIAEAGLNHGGDLNLALRMIDEAADAKANAIKFQAYNSEERFGENKEAVNLVKPAEFG
KKEFLLLKERSQKKNILFFATPFDVPNLNMLKEIGVEILKIASCDICNITLLEAAADSGLIVILSRGTASASEIETAVSI
FKKKKSPFILLHCVSSYPMNEIDANLSAIQTLKSKYEFPIGYSDHSKGIEIPLLAVASGAEIIEKHYTVDRTLQGIDWEI
SAEPKELAKLVTETERIRKILGHGKLEPQASEQEEIEYRNSLRRK

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ncs:A 285 285 1.0000 1.0000 1.0000 0.0 6ncs:B
2 1vli:A 358 264 0.3123 0.2486 0.3371 4.90e-35
3 4ipi:A 351 259 0.2737 0.2222 0.3012 1.95e-28 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A
4 8h2c:A 342 275 0.3088 0.2573 0.3200 5.16e-28 8h2c:B, 8h2c:C, 8h2c:D
5 3g8r:B 336 188 0.2281 0.1935 0.3457 2.24e-21
6 7z0h:I 110 47 0.0526 0.1364 0.3191 1.4 8bws:I, 6cnb:I, 6cnc:I, 6cnd:I, 6cnf:I, 6eu0:I, 6eu1:I, 6eu2:I, 6eu3:I, 6f40:I, 6f41:I, 6f42:I, 5fj8:I, 6tut:I, 7z1l:I, 7z1m:I, 7z1o:I, 7z2z:I, 7z30:I, 7z31:I
7 7b04:B 1120 89 0.0842 0.0214 0.2697 5.7 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
8 4k46:A 214 55 0.0561 0.0748 0.2909 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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