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BioLiP
>protein
HHHHHRNYHLFEKVRKWAYRAIRQGWPVFSQWLDAVIQRVEMYNASLPVPLSPAECRAIGKSIAKYTHRKFSPEGFSAVQ
AARGRKGGTKSKRAAVPTSARSLKPWEALGISRATYYRKLKC

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vw4:A 122 122 1.0000 1.0000 1.0000 1.82e-88 3vw4:B
2 5w7m:A 273 59 0.1475 0.0659 0.3051 0.23
3 7nh7:A 295 82 0.1885 0.0780 0.2805 0.82
4 2faq:A 295 73 0.1639 0.0678 0.2740 1.4 2faq:B, 2far:A, 2far:B
5 3gwj:D 674 48 0.1066 0.0193 0.2708 5.6 3gwj:A, 3gwj:F, 3gwj:B, 3gwj:E, 3gwj:C
6 7xx4:A 395 57 0.1557 0.0481 0.3333 7.2 2iyf:A, 2iyf:B, 4m83:A, 4m83:B, 7xx4:B
7 7xzh:B 730 32 0.0738 0.0123 0.2812 8.9 7m19:C, 7xzh:A, 7xzh:C, 7xzh:D, 7xzh:E, 7xzh:F
8 7uor:A 379 29 0.0902 0.0290 0.3793 9.1 1f4t:A, 1f4t:B, 1f4u:A, 1f4u:B, 1io7:A, 1io7:B, 1io8:A, 1io8:B, 1io9:A, 1io9:B, 4tt5:A, 4tuv:A, 7uor:B, 7uor:C, 7uor:D, 7uor:E, 7uor:F, 4wpd:A, 4wpd:B, 4wqj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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