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BioLiP
>protein
HHHHHMMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5yj8:A 60 60 1.0000 1.0000 1.0000 1.51e-41 8jtn:A, 2lto:A, 6v9t:AAA, 6v9t:BBB
2 4a4f:A 64 53 0.3833 0.3594 0.4340 3.34e-08 4a4h:A, 8poi:A
3 4a4e:A 64 56 0.3667 0.3438 0.3929 4.60e-07 4a4g:A, 4qq6:A, 7w2p:A, 7w30:A, 7w30:B, 7w30:C, 7w30:D
4 5m9n:A 202 50 0.3500 0.1040 0.4200 1.23e-06 5m9n:B
5 4b9w:A 196 50 0.3333 0.1020 0.4000 8.88e-05 4b9w:B
6 3nth:A 167 41 0.2833 0.1018 0.4146 0.002 3nti:A
7 7cfd:F 182 49 0.3333 0.1099 0.4082 0.31 7cfd:B, 7cfd:A, 7cfd:C, 7cfd:E, 7cfd:G, 7cfd:H, 7cfd:D
8 5yz9:A 99 25 0.1833 0.1111 0.4400 0.39
9 7epw:A 373 53 0.2500 0.0402 0.2830 0.57 4a6n:A, 4a6n:B, 4a6n:C, 4a6n:D, 4a99:A, 4a99:C, 4a99:B, 4a99:D, 7epv:A, 4guv:A, 4guv:B, 4guv:C, 4guv:D, 3p9u:A, 3p9u:B, 3p9u:C, 3p9u:D, 3v3n:A, 3v3n:B, 3v3n:C, 3v3n:D, 3v3o:A, 3v3o:B, 3v3o:C, 3v3o:D, 2xdo:A, 2xdo:B, 2xdo:C, 2xdo:D, 2xyo:A, 2xyo:B, 2xyo:C, 2xyo:D, 2y6q:A, 2y6q:B, 2y6q:C, 2y6q:D, 2y6r:A, 2y6r:B, 2y6r:C, 2y6r:D
10 7xmw:B 72 57 0.2500 0.2083 0.2632 1.2 7xmw:A
11 8er0:A 371 50 0.2500 0.0404 0.3000 1.7 8er0:B, 8er1:A, 6wg9:A, 6wg9:B
12 7ase:s 295 49 0.2333 0.0475 0.2857 3.2
13 7smk:B 107 27 0.2000 0.1121 0.4444 4.1 7snv:B
14 1e59:A 239 45 0.2333 0.0586 0.3111 4.2
15 7qh8:A 471 37 0.1667 0.0212 0.2703 5.0 7qhn:A, 7qi8:A
16 3ueq:A 632 19 0.1667 0.0158 0.5263 5.3 4fls:A, 1jg9:A, 1jgi:A, 1mvy:A, 1mw0:A, 1mw1:A, 1mw2:A, 1mw3:A, 5n6v:A, 5n7j:A, 1s46:A, 1zs2:A
17 2cf4:A 330 28 0.1667 0.0303 0.3571 9.9 2wyr:A, 2wyr:B, 2wyr:C, 2wyr:D, 2wyr:E, 2wyr:F, 2wyr:G, 2wyr:H, 2wyr:I, 2wyr:J, 2wyr:K, 2wyr:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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