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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
HHHHHHPIEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPA
GFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGY
LRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVRPLGLQPKRRSAFIFAPPPGID
CHDWPMLVSLDESFYLKPDAGMLLGSPANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPEHTWAGLRSFVADGDLV
AGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRLSP

The query sequence (length=381) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3nyc:A 381 381 1.0000 1.0000 1.0000 0.0 3nye:A, 3nyf:A, 6p9d:A, 6pld:A, 7rdf:A, 3sm8:A
2 4pab:B 824 396 0.2520 0.1165 0.2424 2.63e-11 5l46:A, 5l46:B, 4p9s:A, 4p9s:B, 4paa:A, 4paa:B, 4pab:A
3 1y56:B 374 268 0.1627 0.1658 0.2313 1.75e-09
4 4x9m:A 384 243 0.1444 0.1432 0.2263 8.73e-05 4x9n:A
5 6pxs:A 370 264 0.1890 0.1946 0.2727 0.001 6pxs:B, 6pxs:C, 6pxs:D
6 6bza:C 501 78 0.0682 0.0519 0.3333 0.019 6bza:A, 6bza:B, 6bzn:D, 6bzq:A, 6bzq:B, 6bzq:C, 6bzq:D, 6bzt:A, 6bzt:B, 6bzt:C, 6bzt:D, 6bzz:A, 6bzz:B, 6bzz:C, 6bzz:D
7 7cyx:A 363 390 0.2205 0.2314 0.2154 0.11 7cyx:B
8 3ihg:A 535 47 0.0551 0.0393 0.4468 0.12 3ihg:B, 3ihg:C
9 2gb0:B 389 229 0.1207 0.1183 0.2009 0.23 2a89:A, 2a89:B, 3bhf:A, 3bhf:B, 3bhk:A, 3bhk:B, 1el5:A, 1el5:B, 1el7:A, 1el7:B, 1el8:A, 1el8:B, 1el9:A, 1el9:B, 1eli:A, 1eli:B, 2gb0:A, 2gf3:A, 2gf3:B, 1l9c:A, 1l9c:B, 1l9d:A, 1l9d:B, 1l9e:A, 1l9e:B, 3m0o:A, 3m0o:B, 3m12:A, 3m12:B, 3m13:A, 3m13:B, 3m13:C, 3m13:D, 3qse:A, 3qse:B, 3qsm:A, 3qsm:B, 3qss:A, 3qss:B
10 1zov:A 381 227 0.1129 0.1129 0.1894 0.57 1zov:B
11 8am6:AAA 547 96 0.0814 0.0567 0.3229 0.77 8am3:AAA, 8am3:BBB, 8am6:BaB, 8am8:BBB, 8am8:AAA
12 4kqq:A 520 66 0.0656 0.0481 0.3788 0.79 7ato:A, 7atw:A, 7atx:A, 7au0:A, 7au1:A, 7au8:A, 7au9:A, 7aub:A, 7auh:A, 5df7:A, 5df7:B, 5df8:A, 5df8:B, 5df9:A, 4fsf:A, 6hr6:A, 6hr9:A, 6i1e:A, 7jwl:A, 7kit:A, 4kqo:A, 4kqo:B, 4kqq:B, 4kqr:A, 4kqr:B, 4l0l:A, 3ocl:A, 3ocn:A, 7onk:A, 7onk:B, 4ool:A, 4oom:A, 3pbq:A, 3pbr:A, 3pbs:A, 3pbt:A, 6r3x:A, 6r42:A, 6un1:A, 6un3:A, 6vje:A, 6vot:A, 4wej:A, 4wek:A, 4wel:A, 6y6u:A, 6y6z:A
13 3esx:B 169 79 0.0682 0.1538 0.3291 1.1 3esx:A, 3esy:A, 3esy:B, 3esy:C, 3esy:D, 3esz:A, 3esz:B, 1flv:A, 5ljp:A, 1obo:A, 1obo:B, 1obv:A, 1rcf:A, 2v5u:A, 2v5u:B, 2v5v:A, 2v5v:B
14 4y4m:F 262 33 0.0394 0.0573 0.4545 1.1 4y4m:A, 4y4m:B, 4y4m:C, 4y4m:D, 4y4m:E, 4y4m:G, 4y4m:H
15 8eqm:B 483 89 0.0682 0.0538 0.2921 1.2 8eqm:b
16 2qcu:B 501 52 0.0525 0.0399 0.3846 1.6 2qcu:A, 2r45:A, 2r45:B, 2r46:A, 2r46:B, 2r4e:A, 2r4e:B, 2r4j:A, 2r4j:B
17 8oh5:C 1172 52 0.0551 0.0179 0.4038 1.9 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
18 4c5o:D 333 35 0.0446 0.0511 0.4857 2.1 4a9w:A, 4a9w:B, 4c5o:A, 4c5o:B, 4c5o:C, 4c5o:E, 4c5o:F, 4c5o:G, 4c5o:H
19 4ysh:A 370 264 0.1496 0.1541 0.2159 2.3 4ysh:B
20 1rp0:A 278 38 0.0394 0.0540 0.3947 2.6 1rp0:B
21 3v77:A 224 47 0.0367 0.0625 0.2979 2.7 3v77:B, 3v77:C, 3v77:D, 3v77:E, 3v77:F
22 1sez:A 465 32 0.0394 0.0323 0.4688 2.9 1sez:B
23 6hk1:A 261 33 0.0367 0.0536 0.4242 3.2 6hk1:B, 6hk1:F, 6hk1:C, 6hk1:D, 6hk1:E
24 1f8r:A 483 33 0.0394 0.0311 0.4545 3.2 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
25 5tuk:B 373 20 0.0341 0.0349 0.6500 3.3 5tuk:A, 5tuk:C, 5tuk:D
26 3gdn:A 521 33 0.0341 0.0250 0.3939 3.7 3gdn:B, 3gdp:A, 3gdp:B, 1ju2:A, 1ju2:B
27 7v0b:A 539 68 0.0499 0.0353 0.2794 3.9 7v0b:B, 7v0b:C, 7v0b:D
28 3he3:A 366 35 0.0367 0.0383 0.4000 4.0 3hdq:A, 3hdq:B, 3hdq:C, 3hdq:D, 3hdq:E, 3hdq:F, 3hdq:G, 3hdq:H, 3hdq:I, 3hdq:J, 3hdy:A, 3hdy:B, 3hdy:C, 3hdy:D, 3hdy:E, 3hdy:F, 3hdy:G, 3hdy:H, 3hdy:I, 3hdy:J, 3he3:B, 3he3:C, 3he3:D, 3he3:E, 3he3:F, 3he3:G, 3he3:H, 3he3:I, 3he3:J, 3mj4:A, 3mj4:B, 3mj4:C, 3mj4:D, 3mj4:E, 3mj4:F, 3mj4:G, 3mj4:H, 3mj4:I, 3mj4:J
29 3atq:A 452 30 0.0341 0.0288 0.4333 4.1 3atr:A, 4opc:A, 4opd:A, 4opd:B, 4opg:A, 4opi:A, 4opl:A, 4opt:A, 4opu:A
30 2cul:A 225 20 0.0262 0.0444 0.5000 4.1
31 7yx4:A 650 34 0.0341 0.0200 0.3824 4.2 7ptv:A, 7ptv:B, 7yx4:B, 7yx5:A
32 2uzz:B 372 227 0.1155 0.1183 0.1938 4.2 2uzz:A, 2uzz:C, 2uzz:D
33 3red:A 521 33 0.0341 0.0250 0.3939 4.6 3red:B, 3red:C, 3red:D, 3red:E, 3red:F, 3red:G, 3red:H, 3red:I, 3red:J, 3red:K, 3red:L
34 5tue:A 388 30 0.0367 0.0361 0.4667 4.7 5tue:B, 5tuf:A, 5tuf:B, 5tui:A, 5tui:B
35 8twf:C 385 30 0.0420 0.0416 0.5333 4.8 8twf:D, 8twf:A, 8twf:B
36 8twg:B 385 20 0.0315 0.0312 0.6000 5.5
37 5kow:A 474 41 0.0446 0.0359 0.4146 5.6 6c7s:A, 5kox:A
38 3dme:A 366 213 0.1391 0.1448 0.2488 5.6 3dme:B
39 4fos:A 263 66 0.0446 0.0646 0.2576 5.8 4fq8:A, 4fq8:B, 4fr5:A, 4fr5:B, 4fsh:A, 3phh:A, 3phi:A, 3phi:B, 3phj:A, 3phj:B
40 7rk0:B 262 38 0.0367 0.0534 0.3684 6.2 7rk0:A, 7rk0:C, 7rk0:D
41 3if9:A 364 258 0.1417 0.1484 0.2093 6.9 3if9:B, 3if9:C, 3if9:D, 1ng3:A, 1ng3:B, 1ng4:A, 1ng4:B, 1ryi:A, 1ryi:B, 1ryi:C, 1ryi:D
42 5i39:A 383 43 0.0446 0.0444 0.3953 7.3
43 5tum:A 369 20 0.0315 0.0325 0.6000 7.3 5tum:B
44 5hxw:A 433 43 0.0446 0.0393 0.3953 7.7 5hxw:B, 5hxw:C, 5hxw:D, 5hxw:E, 5hxw:F
45 2wyh:A 905 53 0.0525 0.0221 0.3774 8.7 2wyh:B, 2wyi:A, 2wyi:B
46 6yjo:A 475 66 0.0577 0.0463 0.3333 8.9
47 2rgo:A 557 32 0.0289 0.0197 0.3438 9.2 2rgh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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