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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HGVTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVT
GEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKK
WASVYLSPEYRGLVERLRAVLDSSGLSAEELWPYFKEASLYELEFWQAAYEGH

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2gm8:A 217 213 1.0000 0.9816 1.0000 9.95e-158 2gm8:B, 2gm8:C, 2gm8:D
2 2qcx:B 227 211 0.3286 0.3084 0.3318 4.63e-27 2qcx:A, 1to9:A, 1to9:B, 1yak:A, 1yak:B, 1yak:C, 1yak:D
3 1rtw:B 209 215 0.2911 0.2967 0.2884 2.57e-16 1rtw:A, 1rtw:C, 1rtw:D
4 1z72:B 215 211 0.2394 0.2372 0.2417 1.87e-10
5 2f2g:A 215 118 0.1221 0.1209 0.2203 0.003 2f2g:B, 2q4x:A, 2q4x:B
6 2b0q:A 263 51 0.0704 0.0570 0.2941 0.60 2bkk:A, 2bkk:C, 1j7l:A, 1j7l:B, 1j7u:A, 1j7u:B, 1l8t:A, 3q2j:A, 3q2j:B, 3tm0:A
7 2vaw:A 315 90 0.1080 0.0730 0.2556 0.73 1ofu:A, 1ofu:B
8 4hhz:D 296 50 0.0845 0.0608 0.3600 2.3
9 6mhu:G 341 75 0.0939 0.0587 0.2667 3.8
10 6c66:G 832 58 0.0798 0.0204 0.2931 6.9
11 2onr:A 314 75 0.0798 0.0541 0.2267 7.1 3cij:A, 3cij:B, 2onk:E, 2onk:J, 2ons:A
12 3ju8:A 486 29 0.0563 0.0247 0.4138 7.6 3ju8:B
13 2zy2:A 521 47 0.0704 0.0288 0.3191 7.8
14 6zho:A 577 83 0.1174 0.0433 0.3012 8.4 8ax5:A, 8ax6:A, 8ax7:A, 6d1u:A, 6d1u:B, 6d1u:C, 3n7r:A, 3n7r:C, 3n7r:D, 3n7r:B, 3n7s:A, 3n7s:C, 3n7s:D, 3n7s:B, 7p0f:A, 7p0i:A, 4rwg:A, 4rwg:B, 4rwg:C, 5v6y:A, 5v6y:B, 5v6y:C, 5v6y:D, 6zis:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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