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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HGSAFNTLVFSDEFEYEGKPDPEKWHYQVIPPNNGSWHNNELQHYTNRSENSFVSDGTLKIRAIKEKYTFEGSTKDYTSA
RLNSKFAFTYGKVEVRAKLPSKKGTWPAIWTLGANSNETGNYFGEQYGNAEWPACGSIDILEQNGWDKESTIAHFHWSDL
NSDEYQNLGGTTPITNASGSFHVYSLEWNASAMKVFLDDTLVYELKNSQNTPYNAPHYLLLNIAMGGTLGGDIPENFTDD
IFEIDYVRIYQ

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bpz:B 252 251 1.0000 0.9960 1.0000 0.0 4bow:A, 4bow:B, 4bpz:A, 4bq1:A, 4bq1:B
2 3iln:A 251 259 0.4223 0.4223 0.4093 4.11e-53 3iln:B
3 3azx:A 252 262 0.3705 0.3690 0.3550 4.33e-42 3azx:B, 3azy:A, 3azy:B, 3azy:C, 3azy:D, 3azz:A, 3azz:B, 3azz:C, 3azz:D, 3b00:A, 3b00:B, 3b00:C, 3b00:D, 3b01:A, 3b01:B, 3b01:C, 3b01:D, 4dfs:A, 4dfs:B
4 6xof:A 265 259 0.3745 0.3547 0.3629 2.64e-41 6xqf:A, 6xqg:A, 6xqh:A, 6xql:A, 6xqm:A
5 7ww4:A 480 254 0.3745 0.1958 0.3701 4.50e-40 7wwc:A
6 4crq:A 231 253 0.3665 0.3983 0.3636 4.75e-37 4crq:B, 4cte:A, 4cte:B
7 6jh5:A 232 252 0.3705 0.4009 0.3690 7.07e-35 6jhj:A, 6jia:A, 6m6p:A
8 6t2n:AAA 278 271 0.3665 0.3309 0.3395 7.71e-33 6t2n:BBB
9 2hyk:A 237 265 0.3307 0.3502 0.3132 3.73e-28
10 2vy0:A 264 263 0.3307 0.3144 0.3156 4.64e-27 2vy0:B
11 8xph:A 254 262 0.3068 0.3031 0.2939 1.17e-26 8xph:B, 8xpk:A, 8xpk:B
12 3atg:A 242 259 0.2908 0.3017 0.2819 1.58e-24
13 5nbp:A 237 235 0.2709 0.2869 0.2894 1.92e-20 7kr6:AAA, 7kr6:BBB, 5nbp:B, 6vho:AAA
14 7eo3:A 282 284 0.3068 0.2730 0.2711 1.85e-16
15 3dgt:A 278 248 0.2550 0.2302 0.2581 1.59e-09
16 1ups:A 402 266 0.2669 0.1667 0.2519 2.99e-09 1ups:B
17 6t2o:BBB 242 265 0.2629 0.2727 0.2491 1.75e-08 6t2o:AAA, 6t2p:AAA, 6t2p:BBB, 6t2q:AAA, 6t2q:BBB
18 4w65:A 231 264 0.2869 0.3117 0.2727 2.15e-08
19 4wzf:B 241 264 0.2669 0.2780 0.2538 1.03e-07 4wzf:A
20 6t2s:AAA 241 266 0.2590 0.2697 0.2444 1.07e-07 6t2s:BBB, 6t2s:CCC
21 4xdq:A 237 266 0.2749 0.2911 0.2594 7.94e-07
22 9int:A 282 284 0.2749 0.2447 0.2430 9.53e-07
23 8ep4:A 265 249 0.2470 0.2340 0.2490 1.23e-05 8ep4:B, 8ep4:C, 8ew1:A, 8ew1:B, 8ew1:C
24 4pq9:A 233 263 0.2590 0.2790 0.2471 1.35e-05 4pq9:B
25 3rq0:A 230 263 0.2789 0.3043 0.2662 5.92e-04
26 3wdv:A 298 77 0.1076 0.0906 0.3506 6.62e-04 3wdu:A, 3wdu:B, 3wdu:C, 3wdu:D, 3wdv:B, 3wdv:C, 3wdv:D, 3wdx:A, 3wdx:B, 3wdy:A, 3wdy:B, 3wdy:C, 3wdy:D
27 3i4i:A 215 190 0.1753 0.2047 0.2316 0.072 3i4i:B
28 1mve:A 243 151 0.1434 0.1481 0.2384 0.088 3axd:A, 3axd:B, 3axe:A, 3h0o:A, 3hr9:A, 2r49:A, 1zm1:A, 1zm1:B
29 2cl2:A 298 137 0.1434 0.1208 0.2628 0.11 2w39:A, 2w52:A, 2wlq:A, 2wne:A
30 4xxp:A 207 139 0.1554 0.1884 0.2806 0.47
31 5ocq:B 279 112 0.1355 0.1219 0.3036 0.70 5ocq:A
32 8oin:Aa 381 26 0.0438 0.0289 0.4231 0.74 8oip:Aa, 8oiq:Aa, 8oir:Aa, 8ois:Aa, 8oit:Aa
33 6u7k:A 1064 60 0.0757 0.0179 0.3167 0.80
34 2ayh:A 214 206 0.1952 0.2290 0.2379 1.1 1byh:A, 1glh:A, 1mac:A, 1mac:B, 1u0a:A, 1u0a:B, 1u0a:C, 1u0a:D
35 1umz:A 267 45 0.0518 0.0487 0.2889 1.7 1umz:B
36 5m1i:A 539 84 0.0956 0.0445 0.2857 2.3 6gta:A, 6gvd:A, 6gwf:A, 6gwg:A, 6gx8:A, 5m0x:A, 5m12:A, 5m16:A
37 7fa1:A 276 57 0.0677 0.0616 0.2982 2.5
38 7bka:E 171 49 0.0598 0.0877 0.3061 4.7 4b0b:A, 4b0b:B, 4b0c:A, 4b0c:B, 4b0c:D, 4b0c:C, 4b0c:E, 4b0i:A, 4b0i:B, 4b0i:C, 4b0i:D, 4b0i:E, 4b0j:A, 4b0j:B, 4b0j:C, 4b0j:D, 4b0j:E, 4b0j:F, 4b0j:G, 4b0j:H, 4b0j:I, 4b0j:J, 4b0j:K, 4b0j:L, 4b0j:M, 4b0j:N, 4b0j:O, 4b0j:P, 4b0j:Q, 4b0j:R, 4b0j:S, 4b0j:T, 8b72:A, 8b72:B, 4b8u:A, 4b8u:B, 7bhj:B, 7bhj:C, 7bhj:D, 7bhj:E, 7bis:A, 7bis:B, 7bis:C, 7bis:D, 7bis:E, 7bk9:A, 7bk9:B, 7bk9:C, 7bk9:D, 7bk9:E, 7bka:A, 7bka:B, 7bka:C, 7bka:D, 4cl6:A, 4cl6:B, 4cl6:C, 4cl6:D, 4cl6:E
39 7wh0:A 529 46 0.0478 0.0227 0.2609 5.6 7wh0:B
40 1axk:B 394 51 0.0558 0.0355 0.2745 9.2 1axk:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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