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BioLiP
>protein
HGKPASGHKVRTQHSRRWWMQSKAHHLTAVPHEEARSRPHFPAYTEDVDQPMVVPDGVCCFNCDKPIDGDDINSYVWVPS
GNARVPTTQGYFFHVKCFKCWNCKYRIIHNQFYSKDSRAWCLSCALGRDIRVPTRRWHTSYVNTHRTGSRLTGQFFPRHR
HQMEFLF

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aih:Ax 167 167 1.0000 1.0000 1.0000 5.10e-127 7am2:Ax, 7ane:Ax
2 6yxy:BX 133 130 0.6168 0.7744 0.7923 9.46e-78 7aoi:BX, 6hiv:BX, 6hix:BX
3 1x61:A 72 32 0.0778 0.1806 0.4062 0.002
4 1x63:A 82 36 0.0778 0.1585 0.3611 0.12
5 2cup:A 101 70 0.1078 0.1782 0.2571 0.13
6 2d8z:A 70 31 0.0659 0.1571 0.3548 0.28
7 2dj7:A 80 30 0.0778 0.1625 0.4333 0.41
8 2mbv:A 96 35 0.0659 0.1146 0.3143 0.47
9 2cuq:A 80 31 0.0599 0.1250 0.3226 0.50
10 2dfy:X 158 38 0.0719 0.0759 0.3158 0.97 2dfy:C, 1rut:X
11 1g47:A 70 38 0.0599 0.1429 0.2632 0.98 2kbx:B
12 3f6q:B 72 38 0.0599 0.1389 0.2632 1.1 4hi8:B, 4hi9:B
13 2ehe:A 82 32 0.0659 0.1341 0.3438 2.1
14 2jae:A 478 53 0.0958 0.0335 0.3019 2.5 2jae:B, 2jb1:A, 2jb1:B, 2jb2:A, 2jb2:B, 2jb3:A, 2jb3:B
15 1x4k:A 72 36 0.0719 0.1667 0.3333 2.8
16 7de9:A 58 49 0.0778 0.2241 0.2653 3.4
17 3fzi:A 258 29 0.0599 0.0388 0.3448 3.4 3g00:A, 3g00:B, 3g0a:A, 3g0r:A, 3g0r:B, 3g1k:A, 3g1k:B, 3g2c:A, 3g2c:B, 3g2d:A, 3g2d:B, 3g38:A, 3g3c:A, 3g3c:B, 3g3y:B, 3g3y:A, 3g4t:A, 3g4t:B, 3ga6:A, 3ga6:B, 3w2x:A, 3w2y:A, 3w2y:D
18 8y6k:A 741 15 0.0479 0.0108 0.5333 4.2 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
19 2d8y:A 91 29 0.0539 0.0989 0.3103 5.1
20 2jtn:A 182 39 0.0838 0.0769 0.3590 5.2
21 3ixe:B 70 38 0.0659 0.1571 0.2895 5.3
22 4v4n:Ae 62 44 0.0659 0.1774 0.2500 5.9 4v6u:Be
23 2rgt:B 154 39 0.0838 0.0909 0.3590 7.2 2rgt:A
24 7lt9:B 131 68 0.1018 0.1298 0.2500 8.1 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
25 6mif:A 79 68 0.1018 0.2152 0.2500 8.1
26 1x3h:A 80 59 0.0838 0.1750 0.2373 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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