Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HFFEGTEKLLEVWFSGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jl0:B 311 57 1.0000 0.1768 0.9649 7.51e-32 3dz2:B, 3dz2:A, 3dz3:B, 3dz3:A, 3dz4:B, 3dz4:A, 3dz5:B, 3dz5:A, 3dz6:B, 3dz6:A, 3dz7:B, 3dz7:A, 3ep3:A, 3ep4:A, 3ep5:A, 3ep6:B, 3ep6:A, 3ep7:B, 3ep7:A, 3ep8:B, 3ep8:A, 3ep9:A, 3epa:A, 3epb:A, 3h0v:B, 3h0v:A, 3h0w:B, 3h0w:A, 1i72:B, 1i72:A, 1i79:B, 1i79:A, 1i7b:B, 1i7b:A, 1i7c:A, 1i7c:B, 1i7m:A, 1i7m:B, 1i7m:C, 1i7m:D, 1jl0:A
2 7tui:B 2033 40 0.2545 0.0069 0.3500 1.4 6u5v:B, 6u5w:B
3 3fsr:A 352 15 0.1636 0.0256 0.6000 2.5 3fsr:C, 3ftn:A, 3ftn:B, 3ftn:C, 3ftn:D
4 6sch:C 355 15 0.1636 0.0254 0.6000 2.5 2b83:A, 2b83:B, 2b83:C, 2b83:D, 1jqb:A, 1jqb:B, 1jqb:C, 1jqb:D, 1kev:A, 1kev:B, 1kev:C, 1kev:D, 1ped:A, 1ped:B, 1ped:C, 1ped:D, 6sch:A, 6sch:B, 6sch:D
5 3fpc:A 352 19 0.1818 0.0284 0.5263 4.0 3fpc:B, 3fpc:C, 3fpc:D
6 2oui:A 360 19 0.1818 0.0278 0.5263 4.1 2oui:B, 2oui:C, 2oui:D, 1y9a:A, 1y9a:C
7 7bc4:B 2054 51 0.2909 0.0078 0.3137 4.9
8 7poa:A 398 20 0.1818 0.0251 0.5000 5.7 7poa:B, 7pob:A, 7pob:D, 7pob:B, 7pob:C, 7poc:A, 7poc:D, 7poc:B, 7poc:C
9 4gao:A 193 32 0.2182 0.0622 0.3750 6.1 4gao:B, 4gao:D, 4gao:G
10 6d4b:A 361 20 0.1636 0.0249 0.4500 7.1 6d4b:B, 6d4c:A, 6d4c:B, 5dn9:A, 5dn9:B
11 8phn:A 124 39 0.1636 0.0726 0.2308 9.6

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218