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BioLiP
>protein
HAHLKSATPAADSTVAAPADLRLTFSEGVEATFTKVSLSKDGTEVAIKGLETPDADKKTLVVTPAAPLAAGNYKVVWNAV
SVDTHKSNGEYSFKVK

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bk5:AAA 97 95 0.9792 0.9691 0.9895 1.43e-63 6nfq:A, 6nfq:B, 6nfq:C
2 2c9p:A 102 102 0.4896 0.4608 0.4608 2.62e-20 2c9p:B, 2c9p:C, 2c9q:A
3 5icu:A 102 96 0.3229 0.3039 0.3229 5.79e-09
4 8ytq:D 128 119 0.3750 0.2812 0.3025 5.84e-05 5n1t:W, 8ytq:A, 8ytq:C, 8ytr:A, 8ytr:B
5 7aih:Ah 452 54 0.1667 0.0354 0.2963 5.5 7ane:Ah
6 1y0g:A 169 20 0.1146 0.0651 0.5500 7.0 1y0g:B, 1y0g:C, 1y0g:D
7 6w1n:B 3719 38 0.1562 0.0040 0.3947 8.5 6w1n:D, 6w1n:F, 6w1n:H, 6x34:B, 6x34:D, 6x34:F, 6x34:H
8 6x32:B 3798 38 0.1562 0.0039 0.3947 8.5 6x32:E, 6x32:H, 6x32:K
9 6x35:B 3801 38 0.1562 0.0039 0.3947 8.5 6x35:E, 6x35:H, 6x35:K
10 6x33:B 3816 38 0.1562 0.0039 0.3947 8.5 8drp:A, 8drp:B, 8drp:C, 8drp:D, 6x33:E, 6x33:H, 6x33:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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