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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
HAGTMTLEAYMRFSAKLSEAKDEMGTKEYEVFTKELKKLTNAKLAYGDANGNIDYDALSPEKREEMKTVSMGLQPYFDKL
NGHKSSKEVLTQEEFDRYMEALMTHEIVRVKTKSTGAIKVEEVPEAYKERFMKAEQFMEYVDEKVR

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3fgg:A 147 146 1.0000 0.9932 1.0000 1.45e-105 3fgg:B
2 4wai:A 91 49 0.1027 0.1648 0.3061 0.59 4wai:C, 4wai:B, 4wai:D
3 5o7h:B 129 77 0.1575 0.1783 0.2987 0.92
4 5o6u:B 182 73 0.1575 0.1264 0.3151 1.0
5 3zni:A 390 138 0.2192 0.0821 0.2319 1.5 4a49:A, 5axi:B, 5axi:A, 5axi:C, 9fqh:A, 9fqi:A, 9fqj:A, 9fqj:B, 8gcy:A, 2ldr:A, 3pfv:A, 3pfv:B, 8qng:A, 8qnh:A, 8qni:A, 8qtg:A, 8qth:A, 8qtj:A, 8qtk:A, 8vw4:A, 8vw4:B, 8vw5:A, 8vw5:B, 3zni:E, 3zni:I, 3zni:M
6 6knb:B 1120 62 0.1164 0.0152 0.2742 1.6 6knc:B
7 5tw7:F 490 48 0.1438 0.0429 0.4375 2.6 5tw7:E
8 4kif:B 339 71 0.1644 0.0708 0.3380 2.8 4kib:A, 4kib:B, 4kic:A, 4kic:B, 4kif:A, 4kig:A, 4kig:B, 4m6x:A, 4m6x:B, 4m6y:A, 4m6y:B, 4m71:A, 4m71:B, 4m72:A, 4m72:B, 4m73:A, 4m73:B, 4m74:A, 4m74:B
9 3j6b:C 249 29 0.0822 0.0482 0.4138 3.6 5mrc:C, 5mre:C, 5mrf:C
10 6adq:E 312 26 0.0753 0.0353 0.4231 4.2 6adq:Q, 8ovc:X, 8ovd:Q, 8ovd:X, 7rh5:Q, 7rh5:K, 7rh6:Q, 7rh6:K, 7rh7:Q, 7rh7:K
11 8ovc:Q 286 47 0.1027 0.0524 0.3191 7.2 7e1v:E, 7e1v:Q, 7e1w:E, 7e1w:Q, 7e1x:E, 7e1x:Q, 6hwh:P, 6hwh:L
12 8vxa:A 1139 51 0.1027 0.0132 0.2941 8.5 8vxc:A
13 8vxy:B 1161 51 0.1027 0.0129 0.2941 8.5
14 6ly5:H 170 40 0.0959 0.0824 0.3500 9.3
15 8xw0:B 696 57 0.1096 0.0230 0.2807 9.3 8xw0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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