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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GYKVSGYILPDFSFDATVAPLVKAGFKVEIVGTELYAVTDANGYFEITGVPANASGYTLKISRATYLDRVIANVVVTGDT
SVSTSQAPIMMWVGKIVKDNSINLLDVAEVIRCFNATKGSANYVEELDINRNGAINMQDIMIVHKHFGATSSDYDA

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fl4:I 309 156 0.9936 0.5016 0.9936 1.59e-110 2b59:B, 4fl4:C, 4fl4:F, 4fl4:L, 5g5d:B, 3kcp:A
2 4u3s:B 156 158 0.5449 0.5449 0.5380 2.56e-52 4wi0:B
3 5m0y:B 157 157 0.4551 0.4522 0.4522 1.56e-40 5k39:B
4 2y3n:B 60 59 0.1346 0.3500 0.3559 0.007
5 5hlo:C 93 26 0.0769 0.1290 0.4615 0.087 6ds2:A, 6ds2:C, 6ds2:E, 6ds2:G, 4ggf:A, 4ggf:K, 4ggf:S, 4ggf:U, 5hlo:A, 5hlo:B, 5hlo:D, 5hlv:A, 5hlv:D, 5hlv:B, 5hlv:H, 5hlv:C, 5hlv:E, 5hlv:F, 5hlv:G, 1mr8:A, 1mr8:B, 7quv:A, 8sjb:A, 8sjb:B, 8sjc:A, 8sjc:B, 5w1f:A, 5w1f:C, 5w1f:G, 5w1f:E, 4xjk:A, 4xjk:C, 4xjk:E, 4xjk:G, 4xjk:I, 1xk4:A, 1xk4:B, 1xk4:E, 1xk4:F, 1xk4:I, 1xk4:J
6 8rsj:A 262 46 0.1090 0.0649 0.3696 0.26 8rsi:A, 8rsi:B, 8rsj:B, 8rsk:A, 8rsk:B, 8rsk:C
7 2y3n:D 49 21 0.0705 0.2245 0.5238 0.31
8 7dn3:A 1293 77 0.1346 0.0162 0.2727 0.84 7du2:A
9 7d58:A 1387 77 0.1346 0.0151 0.2727 0.84 7a6h:A, 7ae1:A, 7ae3:A, 7aea:A, 7fji:A, 7fjj:A, 8ity:A, 8iue:A, 8iuh:A
10 2l4h:A 184 68 0.1218 0.1033 0.2794 0.90 2l4i:A, 2lm5:A, 6ocx:D, 6ocx:C, 6ocx:A, 6ocx:B, 6od0:A, 6od0:B, 1xo5:A, 1xo5:B, 1y1a:A, 1y1a:B
11 4qww:A 529 71 0.1538 0.0454 0.3380 4.5 4qww:B
12 7kdp:A 638 26 0.0705 0.0172 0.4231 4.7 7kdp:C, 7kdp:B
13 2ccl:B 62 58 0.0833 0.2097 0.2241 4.9 2ccl:D, 1ohz:B
14 2cdq:A 470 49 0.0833 0.0277 0.2653 6.4 2cdq:B
15 4chb:A 286 24 0.0577 0.0315 0.3750 8.7 4chb:B
16 6mn7:G 236 82 0.1474 0.0975 0.2805 10.0 6mn7:I, 6mn7:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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