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BioLiP
>protein
GYKIRNKSIFWTRAGWKNNWHPKNFNAPRPSYGEFTMGIRCRNDHHSFLRYVQTYRNMSRHCKQYFLGDKQLEETFILGL
RSLFLVPYDSQCLTDQIKHGGERRFVDQLDRDFELISYNTHPYQLFTYTVRNEHLAWKNEQYEKIQKGEKTFEQELLDYL
DEQVLAEKAKLRDGQNFSIERMTEIALHVFRKARAGKVRPAQDVRGPDGNVNDFLEQRRPFEHPNPTGVTH

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ynx:h 231 231 1.0000 1.0000 1.0000 4.63e-178 6ynx:H, 6yny:h, 6yny:H, 6ynz:h, 6ynz:H, 6ynz:h3, 6ynz:H3
2 5m0t:A 287 65 0.0736 0.0592 0.2615 0.25 5m0t:B
3 3ebl:A 323 55 0.0649 0.0464 0.2727 1.8 3ebl:B, 3ebl:C, 3ebl:D, 3ebl:E, 3ebl:F, 3ed1:A, 3ed1:B, 3ed1:C, 3ed1:D, 3ed1:E, 3ed1:F
4 8eeg:B 440 121 0.1212 0.0636 0.2314 2.3 8eef:A, 8eef:B, 8eeg:A, 8eeh:A, 8eeh:B, 8eei:A, 8eei:B, 8eej:B, 8eej:A, 8eek:A, 8eek:B, 8eel:A, 8eel:B, 8eem:A, 8eem:B, 8een:B, 8een:A, 8eeo:A, 8eeo:B
5 2zsi:A 339 76 0.0909 0.0619 0.2763 5.3 2zsh:A
6 4wwh:A 329 36 0.0390 0.0274 0.2500 5.9 4wwh:B
7 6z1p:AL 145 91 0.1212 0.1931 0.3077 5.9
8 7pkt:k 210 83 0.1039 0.1143 0.2892 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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