Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GWEIPEPYVWDESFRVFYEQLDEEHKKIFKGIFDCIRDNSAPNLATLVKVTTNHFTHEEAMMDAAKYSEVVPHKKMHKDF
LEKIGGLSAPVDAKNVDYCKEWLVNHIKGTDFKYKGKL

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1a7d:A 118 118 1.0000 1.0000 1.0000 1.16e-86 1a7e:A, 2mhr:A
2 1i4y:A 113 118 0.4576 0.4779 0.4576 2.04e-32 1i4y:B, 1i4y:C, 1i4y:D, 1i4y:E, 1i4y:F, 1i4y:G, 1i4y:H, 1i4z:A, 1i4z:B, 1i4z:C, 1i4z:D, 1i4z:E, 1i4z:F, 1i4z:G, 1i4z:H
3 1hmd:A 113 118 0.4322 0.4513 0.4322 3.09e-31 1hmd:B, 1hmd:C, 1hmd:D, 1hmo:A, 1hmo:B, 1hmo:C, 1hmo:D, 2hmq:A, 2hmq:B, 2hmq:C, 2hmq:D, 2hmz:A, 2hmz:B, 2hmz:C, 2hmz:D
4 3waq:A 134 112 0.2458 0.2164 0.2589 1.24e-04 3agt:A, 3agt:B, 3agu:A, 3agu:B, 2avk:A, 2awc:A, 2awy:A, 2awy:B, 3whn:A, 3whn:B
5 4xpw:A 131 108 0.2458 0.2214 0.2685 1.80e-04 4xpx:A, 4xpy:A, 4xq1:A
6 6br8:A 249 60 0.1271 0.0602 0.2500 1.2 6br8:B, 6br9:A
7 8gvw:A 671 69 0.1441 0.0253 0.2464 4.4 6aei:A, 6aei:D, 6aei:B, 6aei:C, 7d4p:A, 7d4p:D, 7d4p:B, 7d4p:C, 7d4q:A, 7d4q:D, 7d4q:B, 7d4q:C, 7e4t:A, 7e4t:D, 7e4t:B, 7e4t:C, 8gvw:D, 8gvw:B, 8gvw:C, 7wdb:A, 7wdb:D, 7wdb:B, 7wdb:C
8 7x6i:A 687 69 0.1441 0.0247 0.2464 4.6 8gvx:B, 8gvx:A, 8gvx:D, 8gvx:C, 7x6c:C, 7x6c:B, 7x6c:A, 7x6c:D, 7x6i:D, 7x6i:B, 7x6i:C, 6ysn:A, 6ysn:B, 6ysn:C, 6ysn:D
9 8tlq:A 1283 28 0.0932 0.0086 0.3929 5.5 8tlt:A, 6v93:A
10 7s0t:A 1231 20 0.0847 0.0081 0.5000 7.1
11 5y4c:A 249 51 0.1441 0.0683 0.3333 7.2
12 1gpm:A 501 71 0.1949 0.0459 0.3239 7.6 1gpm:B, 1gpm:C, 1gpm:D
13 7sup:A 129 59 0.1525 0.1395 0.3051 9.5 7svc:A, 7swg:A, 7swi:A, 7sxc:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218