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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKS
ISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKY
PPTVSMVEGQGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEEEEL

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6rus:B 220 215 1.0000 0.9773 1.0000 4.79e-158 7b26:B, 7noz:D, 8q6r:D, 8q6r:F, 6rur:V, 6rur:Y, 6ruv:V, 6ruv:Y, 6rv6:B, 6s08:A, 6s0a:A, 6s0b:A, 6sej:B
2 6rus:A 234 126 0.2279 0.2094 0.3889 7.77e-17 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
3 6rus:A 234 163 0.2512 0.2308 0.3313 4.06e-12 7b26:A, 7noz:C, 8q6r:C, 8q6r:E, 6rur:X, 6rur:U, 6ruv:X, 6ruv:U, 6rv6:A, 6s08:B, 6s0a:B, 6s0b:B, 6sej:A
4 7yyk:A 114 122 0.2140 0.4035 0.3770 1.47e-13 1lsl:A
5 7yyk:A 114 52 0.1302 0.2456 0.5385 3.72e-12 1lsl:A
6 7yyk:A 114 102 0.1488 0.2807 0.3137 3.49e-07 1lsl:A
7 6ool:A 244 54 0.1116 0.0984 0.4444 8.28e-08
8 6ool:A 244 56 0.0884 0.0779 0.3393 0.40
9 6qig:A 581 54 0.1116 0.0413 0.4444 1.57e-07 3ghm:A, 3ghn:A, 3vn4:A
10 7za1:E 251 51 0.1023 0.0876 0.4314 1.92e-06 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
11 7za1:E 251 56 0.0837 0.0717 0.3214 2.9 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
12 3t5o:A 871 66 0.1209 0.0299 0.3939 2.77e-04
13 7r84:A 52 52 0.1023 0.4231 0.4231 4.31e-04 7r84:C, 7r84:D
14 7r84:A 52 60 0.1023 0.4231 0.3667 0.029 7r84:C, 7r84:D
15 7r84:A 52 29 0.0651 0.2692 0.4828 1.3 7r84:C, 7r84:D
16 8ckk:B 121 115 0.1628 0.2893 0.3043 0.001 8ckg:A, 8ckg:B, 8ckk:A, 8ckl:A, 8ckl:B
17 4e0s:B 898 69 0.1209 0.0290 0.3768 0.002 7nyc:B, 7nyd:B
18 4a5w:B 871 69 0.1209 0.0299 0.3768 0.002
19 7nyc:C 809 52 0.0977 0.0260 0.4038 0.007 7nyd:C
20 7nyc:C 809 71 0.0977 0.0260 0.2958 0.41 7nyd:C
21 7nyc:D 487 52 0.0977 0.0431 0.4038 0.23 7nyd:D
22 7nyc:D 487 33 0.0605 0.0267 0.3939 3.0 7nyd:D
23 7r84:B 45 51 0.0837 0.4000 0.3529 0.45 7r85:A, 7r86:C
24 7r84:B 45 28 0.0651 0.3111 0.5000 1.7 7r85:A, 7r86:C
25 2ifw:A 206 42 0.0651 0.0680 0.3333 0.96 2ifr:A, 2ifw:B, 1s2k:A
26 7r86:D 40 37 0.0698 0.3750 0.4054 1.0
27 7r86:D 40 28 0.0651 0.3500 0.5000 1.4
28 3ojy:B 504 34 0.0651 0.0278 0.4118 1.1 8b0f:D
29 5foe:B 435 51 0.0651 0.0322 0.2745 2.0 5foe:A
30 5foe:B 435 59 0.1023 0.0506 0.3729 2.5 5foe:A
31 7nyd:E 484 35 0.0605 0.0269 0.3714 2.7 7nyc:E
32 8b0f:E 513 35 0.0605 0.0253 0.3714 3.1 3ojy:A
33 3gid:A 460 44 0.0698 0.0326 0.3409 3.2 3gid:B
34 3jrx:A 496 44 0.0698 0.0302 0.3409 3.5 5kkn:B, 5kkn:C
35 7nyd:G 413 53 0.0791 0.0412 0.3208 5.3 8de6:A, 8de6:C, 8de6:G, 7nyc:H, 7nyd:H
36 6dlw:A 460 53 0.0791 0.0370 0.3208 5.7 6dlw:B, 6dlw:C, 6dlw:D, 6dlw:E, 6dlw:F, 6dlw:G, 6dlw:H, 6dlw:I, 6dlw:J, 6dlw:K, 6dlw:L, 6dlw:M, 6dlw:N, 6dlw:O, 6dlw:P, 6dlw:Q, 6dlw:R, 6dlw:S, 6dlw:T, 6dlw:U, 6dlw:V
37 3rde:A 552 52 0.0698 0.0272 0.2885 9.2 3rde:B, 3rde:C, 3rde:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218