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BioLiP
>protein
GTKQEKTILNMARFIRSQALTILEKANELDADEIADIAESIHDHADEIYRSALARFGDD

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1f4n:A 59 59 1.0000 1.0000 1.0000 1.60e-37 1f4m:A, 1f4m:C, 1f4m:E, 1f4n:B
2 1yo7:A 120 55 0.7627 0.3750 0.8182 3.03e-27 1yo7:B
3 1yo7:A 120 29 0.4068 0.2000 0.8276 1.25e-10 1yo7:B
4 5x51:M 1386 56 0.3390 0.0144 0.3571 1.1 5x4z:A, 5x51:A, 8yfr:A
5 5xon:A 1427 42 0.2712 0.0112 0.3810 1.9 6a5l:A, 6a5o:A, 6a5p:A, 6a5r:A, 6a5t:A, 6a5u:A, 8h0v:A, 8h0w:A, 8he5:A, 6inq:A, 6ir9:A, 6j4w:A, 6j4x:A, 6j4y:A, 6j4z:A, 6j50:A, 6j51:A, 8jh2:A, 8jh3:A, 8jh4:A, 7wbv:A, 7wbw:A, 7wbx:A, 5x4z:M, 5x50:A, 7xn7:A, 5xog:A, 7xse:A, 7xsx:A, 7xsz:A, 7xt7:A, 7xtd:A, 7xti:A, 8yfq:A
6 7d80:5 432 45 0.2712 0.0370 0.3556 3.2 7d6z:h, 1w2b:5
7 8yon:C 605 40 0.2373 0.0231 0.3500 3.9 9imj:A, 8ylu:C, 8ylu:D, 8yo1:C, 8yo1:D, 8yo7:D, 8yo7:C, 8yod:C, 8yod:D, 8yon:D
8 3wst:I 644 36 0.2542 0.0233 0.4167 5.4 3wst:A, 3wst:D, 3wst:B, 3wst:C, 3wst:F, 3wst:E, 3wst:G, 3wst:H, 3wst:M, 3wst:N, 3wst:O, 3wst:P, 3wst:Q, 3wst:R, 3wst:J, 3wst:K, 3wst:L, 3x0d:A
9 4kp4:A 219 33 0.2203 0.0594 0.3939 5.9 1bxd:A
10 8b9d:2 576 42 0.2542 0.0260 0.3571 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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