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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSSGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPSSG

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5y95:A 80 80 1.0000 1.0000 1.0000 9.83e-55
2 2czy:A 77 69 0.8500 0.8831 0.9855 3.95e-46
3 6xdj:A 441 67 0.2875 0.0522 0.3433 1.11e-09 6xaw:A, 6xdj:B
4 1e91:A 85 82 0.3125 0.2941 0.3049 3.84e-09 1pd7:A
5 1g1e:B 89 82 0.3000 0.2697 0.2927 8.82e-07 1s5q:B, 1s5r:B
6 6s1y:A 595 69 0.2750 0.0370 0.3188 0.084 6s1z:A
7 6wan:F 415 44 0.2000 0.0386 0.3636 0.23
8 6vm6:B 440 44 0.2000 0.0364 0.3636 0.24 6vm6:A, 6vm6:C, 6vm6:D, 6vm6:E, 6wan:A, 6wan:B, 6wan:C, 6wan:D, 6wan:E
9 7sss:F 173 45 0.1375 0.0636 0.2444 0.25 7sss:E, 7sss:H, 7sss:G
10 7qdy:A 1169 16 0.1250 0.0086 0.6250 0.63 7qdz:A, 7qe0:A
11 2izo:C 244 54 0.2125 0.0697 0.3148 0.65
12 7c2h:G 197 42 0.1500 0.0609 0.2857 3.5
13 3kfu:C 377 38 0.1625 0.0345 0.3421 4.3 3kfu:A, 3kfu:D, 3kfu:B
14 2wpb:A 302 35 0.1500 0.0397 0.3429 4.8 4bwl:A, 4bwl:B, 4bwl:C, 4bwl:D, 1fdy:A, 1fdy:B, 1fdy:C, 1fdy:D, 1fdz:A, 1fdz:B, 1fdz:C, 1fdz:D, 1hl2:A, 1hl2:B, 1hl2:C, 1hl2:D, 3lbc:D, 3lcw:A, 3lcw:B, 3lcw:C, 3lcw:D, 4uui:A, 4uui:B, 4uui:C, 4uui:D, 2wkj:C, 2wkj:D, 2wpb:B, 2wpb:C, 2wpb:D, 2xfw:A, 2xfw:B, 2xfw:C, 2xfw:D
15 7sh1:A 626 48 0.2500 0.0319 0.4167 5.7 7sh1:B
16 3oes:A 157 26 0.1250 0.0637 0.3846 7.7
17 1l9m:B 681 18 0.1000 0.0117 0.4444 7.8 1l9m:A, 1l9n:A, 1l9n:B, 1nud:A, 1nud:B, 1nuf:A, 1nug:A, 1nug:B, 8oxv:A, 8oxw:A, 8oxx:A
18 6hrk:A 135 12 0.1000 0.0593 0.6667 9.2 6hrk:B, 6hrk:C, 6hrk:D
19 1fu5:A 111 21 0.0875 0.0631 0.3333 9.8 1oo4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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