Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSSGSSGSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPSSG

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1x4w:A 67 67 1.0000 1.0000 1.0000 7.75e-44
2 1wfl:A 74 56 0.3582 0.3243 0.4286 2.76e-11
3 1wg2:A 64 55 0.3731 0.3906 0.4545 4.55e-11
4 1wfp:A 74 56 0.3731 0.3378 0.4464 1.01e-10
5 1wfh:A 64 51 0.3881 0.4062 0.5098 1.54e-09
6 1wff:A 85 87 0.4925 0.3882 0.3793 1.08e-07
7 1x4v:A 63 69 0.4030 0.4286 0.3913 0.001
8 1wfk:A 88 26 0.1642 0.1250 0.4231 0.36
9 2d8y:A 91 43 0.1940 0.1429 0.3023 0.44
10 2d9m:A 69 69 0.3284 0.3188 0.3188 1.5
11 2dj8:A 60 67 0.3582 0.4000 0.3582 2.5
12 5dka:A 96 24 0.1642 0.1146 0.4583 3.0 5dka:B, 8gbq:B, 8gcb:B
13 2dlk:A 79 79 0.4030 0.3418 0.3418 5.3
14 3ef1:A 372 32 0.2090 0.0376 0.4375 6.1 3ef0:A, 4xpz:A, 4xq0:A
15 4njm:A 303 25 0.1642 0.0363 0.4400 6.7 4njm:B, 4njo:A
16 2csz:A 76 78 0.3881 0.3421 0.3333 7.0
17 2ect:A 78 55 0.2836 0.2436 0.3455 7.4

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218