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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSSGSSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSG
PSSG

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1x4u:A 84 84 1.0000 1.0000 1.0000 2.56e-54
2 6w9n:A 78 63 0.2500 0.2692 0.3333 4.73e-07
3 1wfk:A 88 84 0.3452 0.3295 0.3452 9.05e-07
4 3t7l:A 74 70 0.2738 0.3108 0.3286 1.50e-05
5 2ct2:A 88 88 0.3452 0.3295 0.3295 9.43e-05 5fey:A, 5fey:B
6 1vfy:A 67 59 0.2381 0.2985 0.3390 1.95e-04
7 1joc:A 123 63 0.2619 0.1789 0.3492 2.24e-04 1hyi:A, 1hyj:A, 1joc:B
8 2yqm:A 89 88 0.3214 0.3034 0.3068 0.001 2yw8:A
9 4avx:A 218 67 0.2381 0.0917 0.2985 0.032 3zyq:A
10 1dvp:A 217 62 0.2024 0.0783 0.2742 0.089
11 5koa:B 246 22 0.1071 0.0366 0.4091 0.91
12 8adl:B 801 79 0.2262 0.0237 0.2405 2.2 8adl:G, 8adl:O, 8adl:J
13 2ct0:A 74 90 0.3690 0.4189 0.3444 2.4
14 2rpz:A 192 14 0.1310 0.0573 0.7857 5.9
15 4r3u:A 557 36 0.1667 0.0251 0.3889 6.0 4r3u:B
16 2pv0:B 347 46 0.1905 0.0461 0.3478 6.0 2pv0:A, 2pv0:C, 2pvc:B, 2pvc:A, 2pvc:C
17 3vth:A 753 78 0.2619 0.0292 0.2821 6.7 3vth:B, 3vti:A, 3vti:B
18 7xyz:B 456 48 0.1905 0.0351 0.3333 8.6 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
19 4txa:A 367 32 0.1071 0.0245 0.2812 9.7 5f5f:A, 5f5f:G, 5f5f:C, 5f5f:E, 5f5h:A, 5f5h:B, 4qi2:A, 4qi2:B, 4qi2:C, 4qi2:D, 4qik:A, 4qik:B, 4qil:B, 4qil:A, 6tqa:A, 6tqa:B, 6tqa:C, 6tqa:D, 6tqb:A, 4ywq:A, 4zld:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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