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BioLiP
>protein
GSSGSSGQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQSGPSSG

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2e72:A 49 49 1.0000 1.0000 1.0000 3.07e-31
2 2emb:A 44 49 0.4082 0.4545 0.4082 0.008
3 2epr:A 48 49 0.4286 0.4375 0.4286 0.12
4 2ena:A 46 49 0.4286 0.4565 0.4286 0.13
5 5ijl:A 943 33 0.2857 0.0148 0.4242 0.20
6 8ppt:B 1191 33 0.2857 0.0118 0.4242 0.21 8ppu:B, 8ppv:B, 6t8h:B
7 2en4:A 46 49 0.4082 0.4348 0.4082 0.27
8 2rsj:A 92 29 0.2245 0.1196 0.3793 0.34 2els:A, 2rut:A, 2rv6:A
9 2eou:A 44 49 0.4082 0.4545 0.4082 0.67
10 2ivk:B 213 20 0.2245 0.0516 0.5500 0.75 2ivk:A, 2ivk:D, 2ivk:C, 1ouo:A, 1oup:B, 1oup:A
11 1x4s:A 59 63 0.4898 0.4068 0.3810 0.86
12 2km0:A 74 22 0.2449 0.1622 0.5455 1.3 3dso:A, 2lel:A, 3n7d:A, 3n7d:B, 3n7e:A, 3n7e:B
13 2pu3:A 207 20 0.2245 0.0531 0.5500 1.8
14 2eoy:A 46 52 0.4082 0.4348 0.3846 2.4
15 2wbt:A 125 21 0.1633 0.0640 0.3810 2.6 2wbt:B
16 4lqx:B 309 22 0.1837 0.0291 0.4091 3.4 4lqx:A
17 5apo:y 217 19 0.2041 0.0461 0.5263 4.3 5apn:y, 6rzz:u
18 4nl8:A 549 22 0.1837 0.0164 0.4091 4.6
19 4nl8:E 571 22 0.1837 0.0158 0.4091 4.6 4nl8:B
20 6dgd:A 704 22 0.1837 0.0128 0.4091 5.3 6dgd:B, 4nl4:H
21 8c29:S 211 26 0.2041 0.0474 0.3846 5.3 8c29:s
22 2emc:A 46 49 0.3878 0.4130 0.3878 7.2
23 2con:A 79 36 0.2857 0.1772 0.3889 7.2
24 8uxw:A 400 23 0.1224 0.0150 0.2609 7.4 8e9b:A, 8uxx:A, 6w17:A
25 8fjl:D 1138 19 0.1633 0.0070 0.4211 8.3 8fjk:E, 8fjk:G, 8fjk:I, 8fjk:K, 8fjl:E, 8fjl:G, 8fjl:I, 8fjl:K, 6m99:C
26 3f2b:A 994 23 0.2245 0.0111 0.4783 9.4 3f2c:A, 3f2d:A
27 2co8:A 82 82 0.5102 0.3049 0.3049 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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