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BioLiP
>protein
GSSGSSGIHHLPPVKAPLQTKKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVS
GPSSG

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1wff:A 85 85 1.0000 1.0000 1.0000 1.84e-59
2 1wfh:A 64 58 0.3765 0.5000 0.5517 6.89e-14
3 1wfl:A 74 71 0.4235 0.4865 0.5070 7.63e-14
4 1wfp:A 74 70 0.3647 0.4189 0.4429 1.13e-13
5 1wg2:A 64 58 0.3294 0.4375 0.4828 2.37e-11
6 1x4w:A 67 67 0.3059 0.3881 0.3881 7.88e-07
7 1wys:A 75 88 0.3647 0.4133 0.3523 0.001
8 1wfe:A 86 41 0.1765 0.1744 0.3659 0.20
9 5ij4:A 49 39 0.1765 0.3061 0.3846 0.53
10 7t27:A 140 40 0.1765 0.1071 0.3750 1.1
11 1x4v:A 63 87 0.3294 0.4444 0.3218 1.3
12 7f0r:D 1339 57 0.1882 0.0119 0.2807 4.3 7vf9:D, 7xl3:D, 7xl4:D, 7xya:D, 7xyb:D
13 6tf9:UP1 569 53 0.1765 0.0264 0.2830 5.0
14 6p24:B 793 29 0.1059 0.0113 0.3103 5.1
15 2ea5:A 68 87 0.2824 0.3529 0.2759 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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