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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSSGSSGALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMN
SGPSSG

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ct7:A 86 86 1.0000 1.0000 1.0000 3.25e-61
2 6sc6:A 365 74 0.8488 0.2000 0.9865 7.67e-50 5edv:A, 5edv:B, 6gzy:A, 6gzy:B, 6kc5:B, 6kc6:A, 6kc6:C, 6kc6:E, 6kc6:G, 6kc6:I, 6kc6:K, 4ljo:A, 4ljp:A, 4ljq:B, 4ljq:C, 4ljq:A, 4ljq:D, 6sc5:A, 6sc7:A, 6sc8:A, 6sc9:A, 7v8f:B, 7v8g:D, 7v8g:C
3 1wfe:A 86 64 0.2326 0.2326 0.3125 0.024
4 7y7l:A 45 34 0.1512 0.2889 0.3824 0.034
5 8eb0:A 255 51 0.1744 0.0588 0.2941 0.52 7m4m:A, 7m4m:B, 7m4n:A, 7m4n:B, 7m4o:A
6 1x4v:A 63 86 0.2558 0.3492 0.2558 0.67
7 1weo:A 93 101 0.3372 0.3118 0.2871 0.69
8 2ecn:A 70 39 0.1628 0.2000 0.3590 0.77 5xek:A
9 2ecj:A 58 71 0.2674 0.3966 0.3239 1.2
10 8aaf:e 1527 58 0.1860 0.0105 0.2759 1.4 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
11 2yur:A 74 62 0.2209 0.2568 0.3065 1.5
12 2d8q:A 70 88 0.3023 0.3714 0.2955 3.6 2dan:A
13 7mq8:NJ 827 33 0.1047 0.0109 0.2727 3.7 7mq8:NK, 7mq9:NJ, 7mq9:NK
14 1x4s:A 59 59 0.2326 0.3390 0.3390 4.5
15 8a22:AL 394 24 0.1395 0.0305 0.5000 9.2 8apn:AL, 8apo:AL
16 8a22:AN 420 24 0.1395 0.0286 0.5000 9.2 8a22:AM, 8apn:AN, 8apn:AM, 8apo:AN, 8apo:AM
17 8kdb:A 2117 35 0.1279 0.0052 0.3143 9.8 8kdc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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