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BioLiP
>protein
GSRRASVGSEFTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSNEEINEELGIGQDEADA

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qxz:A 79 79 1.0000 1.0000 1.0000 3.92e-53
2 2l7p:A 100 91 1.0000 0.7900 0.8681 8.77e-50 5yvx:A
3 5ix1:A 414 53 0.2532 0.0483 0.3774 9.90e-09
4 6o1e:A 431 48 0.2278 0.0418 0.3750 6.01e-08 5ix1:B, 5ix2:A, 5ix2:B, 4qq4:A, 4qq4:B, 5svi:A, 5svi:B, 5svx:A, 5svy:A
5 6o5w:A 57 57 0.2658 0.3684 0.3684 8.28e-08
6 7k7t:A 390 52 0.2405 0.0487 0.3654 1.12e-07 7k7t:B
7 4o62:B 57 52 0.2152 0.2982 0.3269 5.10e-07 4o62:A, 4o62:C, 4z0o:A, 4z0r:B, 4z0r:A, 4z0r:C
8 5ofb:B 541 44 0.1646 0.0240 0.2955 0.068 5of9:A, 5of9:B, 5ofa:B, 5ofa:A, 5ofb:A
9 7vgb:A 681 34 0.1266 0.0147 0.2941 2.3 7vgb:B, 7vgc:A
10 4x2h:A 192 32 0.1139 0.0469 0.2812 3.1 4x2o:A
11 5kkw:A 237 43 0.1519 0.0506 0.2791 3.9
12 7s9w:B 529 11 0.1013 0.0151 0.7273 5.0
13 6nrz:A 517 31 0.1266 0.0193 0.3226 8.4 6nrz:B, 6ns0:A, 6ns0:B, 6o3f:A, 6o3f:B
14 2bwr:A 401 28 0.1519 0.0299 0.4286 8.9 2bwm:A, 2bwr:B, 2c25:A, 2c25:B, 2c4d:A, 4up4:A, 4up4:B
15 2k16:A 75 38 0.1392 0.1467 0.2895 9.3 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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