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BioLiP
>protein
GSPGENLKHIITLGQVIHKRCEEMKYCKKQCRRLGHRVLGLIKPLEMLQDQGKRSVPSEKLTTAMNRFKAALEEANGEIE
KFSNRSNICRFLTASQDKILFKDVNRKLSDVWKELSLLLQVEQRMPVSPISQGASWAQEDQQDADEDRRAFQMLRRD

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7nm2:A 157 157 1.0000 1.0000 1.0000 2.44e-116 7nm4:A, 7nm5:A, 6ux8:A, 6zpr:A, 6zz1:A, 6zz1:B
2 4fkc:A 370 95 0.1720 0.0730 0.2842 0.16 4rgz:A, 4rgz:N, 4rgz:1, 4rgz:e
3 5cd6:A 575 54 0.0892 0.0243 0.2593 4.8
4 4xyj:A 768 63 0.1274 0.0260 0.3175 7.5 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
5 4ar9:A 392 44 0.0892 0.0357 0.3182 7.7 4ar8:A, 4ar8:B, 4ar9:B
6 7tmv:A 159 29 0.0892 0.0881 0.4828 7.8 7tmv:B
7 8b9o:A 143 57 0.1146 0.1259 0.3158 7.9
8 2isa:A 482 69 0.1338 0.0436 0.3043 8.2 2isa:B, 2isa:C, 2isa:D, 2isa:E, 2isa:F, 2isa:G, 2isa:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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