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BioLiP
>protein
GSPEFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSNKYYCNEHV

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jwo:A 82 74 1.0000 0.8659 0.9595 5.73e-49 8t4r:A, 2v83:A, 2v83:B, 2v83:C, 2v85:A, 2v85:B, 2v86:B, 2v86:A, 2v87:A, 2v87:B, 2v88:A, 2v88:B, 2v89:B, 2v89:A
2 8sm5:I 138 30 0.1408 0.0725 0.3333 1.8
3 2wh6:A 157 30 0.1408 0.0637 0.3333 2.0 7p33:B, 7p33:D, 7p33:A, 7p33:E, 7p9w:A, 8sm5:A, 8sm5:C, 8sm5:G, 8sm5:E, 2v6q:A, 2xpx:A
4 8ro0:A 2231 44 0.1972 0.0063 0.3182 3.6 8ro1:A
5 8fia:A 1772 24 0.1408 0.0056 0.4167 3.6
6 7lbe:C 299 29 0.1831 0.0435 0.4483 3.8 7lbf:C, 7lbg:C
7 6ndr:A 188 24 0.1127 0.0426 0.3333 4.5 6ndr:B
8 3oft:A 396 24 0.0986 0.0177 0.2917 5.8 3oft:B, 3oft:C, 3ofu:A, 3ofu:B, 3ofu:C, 3ofu:D, 3ofu:E, 3ofu:F
9 7c86:A 296 52 0.2254 0.0541 0.3077 8.4 6csn:A, 6cso:A, 7e6x:A, 7e6y:A, 7e6z:A, 7e70:A, 7e71:A, 3ug9:A, 4yzi:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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